Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02109

Experiment: Bu1_100

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02108 and H281DRAFT_02109 are separated by 288 nucleotidesH281DRAFT_02109 and H281DRAFT_02110 are separated by 87 nucleotides H281DRAFT_02108: H281DRAFT_02108 - haloacetate dehalogenase, at 232,998 to 233,888 _02108 H281DRAFT_02109: H281DRAFT_02109 - nitronate monooxygenase, at 234,177 to 235,136 _02109 H281DRAFT_02110: H281DRAFT_02110 - methylmalonyl-CoA mutase, at 235,224 to 238,622 _02110 Position (kb) 234 235 236Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 233.254 kb on + strand, within H281DRAFT_02108at 233.306 kb on - strand, within H281DRAFT_02108at 233.374 kb on + strand, within H281DRAFT_02108at 233.374 kb on + strand, within H281DRAFT_02108at 233.374 kb on + strand, within H281DRAFT_02108at 233.479 kb on + strand, within H281DRAFT_02108at 233.480 kb on - strand, within H281DRAFT_02108at 233.480 kb on - strand, within H281DRAFT_02108at 233.480 kb on - strand, within H281DRAFT_02108at 233.480 kb on - strand, within H281DRAFT_02108at 233.480 kb on - strand, within H281DRAFT_02108at 233.657 kb on - strand, within H281DRAFT_02108at 233.702 kb on - strand, within H281DRAFT_02108at 233.800 kb on - strandat 233.800 kb on - strandat 233.837 kb on + strandat 233.837 kb on + strandat 233.838 kb on - strandat 233.838 kb on - strandat 233.838 kb on - strandat 233.972 kb on + strandat 233.972 kb on + strandat 234.038 kb on - strandat 234.371 kb on + strand, within H281DRAFT_02109at 234.371 kb on + strand, within H281DRAFT_02109at 234.371 kb on + strand, within H281DRAFT_02109at 234.372 kb on - strand, within H281DRAFT_02109at 234.544 kb on - strand, within H281DRAFT_02109at 234.659 kb on + strand, within H281DRAFT_02109at 234.659 kb on + strand, within H281DRAFT_02109at 234.660 kb on - strand, within H281DRAFT_02109at 234.783 kb on + strand, within H281DRAFT_02109at 234.783 kb on + strand, within H281DRAFT_02109at 234.783 kb on + strand, within H281DRAFT_02109at 234.783 kb on + strand, within H281DRAFT_02109at 234.783 kb on + strand, within H281DRAFT_02109at 234.783 kb on + strand, within H281DRAFT_02109at 234.784 kb on - strand, within H281DRAFT_02109at 234.784 kb on - strand, within H281DRAFT_02109at 234.784 kb on - strand, within H281DRAFT_02109at 234.784 kb on - strand, within H281DRAFT_02109at 234.835 kb on - strand, within H281DRAFT_02109at 234.835 kb on - strand, within H281DRAFT_02109at 234.835 kb on - strand, within H281DRAFT_02109at 234.876 kb on + strand, within H281DRAFT_02109at 234.877 kb on - strand, within H281DRAFT_02109at 234.877 kb on - strand, within H281DRAFT_02109at 234.910 kb on - strand, within H281DRAFT_02109at 235.226 kb on - strandat 235.226 kb on - strandat 235.226 kb on - strandat 235.229 kb on + strandat 235.229 kb on + strandat 235.229 kb on + strandat 235.230 kb on - strandat 235.230 kb on - strandat 235.240 kb on + strandat 235.241 kb on - strandat 235.413 kb on + strandat 235.414 kb on - strandat 235.831 kb on + strand, within H281DRAFT_02110at 235.831 kb on + strand, within H281DRAFT_02110at 235.898 kb on + strand, within H281DRAFT_02110at 235.899 kb on - strand, within H281DRAFT_02110at 235.899 kb on - strand, within H281DRAFT_02110at 235.921 kb on + strand, within H281DRAFT_02110at 236.011 kb on + strand, within H281DRAFT_02110at 236.012 kb on - strand, within H281DRAFT_02110at 236.089 kb on + strand, within H281DRAFT_02110at 236.089 kb on + strand, within H281DRAFT_02110at 236.089 kb on + strand, within H281DRAFT_02110at 236.089 kb on + strand, within H281DRAFT_02110at 236.090 kb on - strand, within H281DRAFT_02110at 236.102 kb on - strand, within H281DRAFT_02110

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_100
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233,254 + H281DRAFT_02108 0.29 -0.3
233,306 - H281DRAFT_02108 0.35 -0.4
233,374 + H281DRAFT_02108 0.42 -0.9
233,374 + H281DRAFT_02108 0.42 +0.6
233,374 + H281DRAFT_02108 0.42 -0.8
233,479 + H281DRAFT_02108 0.54 +3.2
233,480 - H281DRAFT_02108 0.54 +1.6
233,480 - H281DRAFT_02108 0.54 +1.5
233,480 - H281DRAFT_02108 0.54 +0.4
233,480 - H281DRAFT_02108 0.54 +1.2
233,480 - H281DRAFT_02108 0.54 -0.8
233,657 - H281DRAFT_02108 0.74 +1.7
233,702 - H281DRAFT_02108 0.79 -0.6
233,800 - -0.5
233,800 - -0.9
233,837 + -2.8
233,837 + +0.3
233,838 - +0.2
233,838 - +0.6
233,838 - +0.8
233,972 + -0.7
233,972 + -1.3
234,038 - +1.0
234,371 + H281DRAFT_02109 0.20 +1.7
234,371 + H281DRAFT_02109 0.20 -0.3
234,371 + H281DRAFT_02109 0.20 +1.5
234,372 - H281DRAFT_02109 0.20 -0.5
234,544 - H281DRAFT_02109 0.38 +0.3
234,659 + H281DRAFT_02109 0.50 -1.2
234,659 + H281DRAFT_02109 0.50 -0.4
234,660 - H281DRAFT_02109 0.50 -0.1
234,783 + H281DRAFT_02109 0.63 -0.3
234,783 + H281DRAFT_02109 0.63 -0.4
234,783 + H281DRAFT_02109 0.63 +0.8
234,783 + H281DRAFT_02109 0.63 +1.1
234,783 + H281DRAFT_02109 0.63 -0.2
234,783 + H281DRAFT_02109 0.63 +0.5
234,784 - H281DRAFT_02109 0.63 -0.0
234,784 - H281DRAFT_02109 0.63 -0.2
234,784 - H281DRAFT_02109 0.63 -0.2
234,784 - H281DRAFT_02109 0.63 -1.8
234,835 - H281DRAFT_02109 0.69 +0.3
234,835 - H281DRAFT_02109 0.69 -2.9
234,835 - H281DRAFT_02109 0.69 -0.5
234,876 + H281DRAFT_02109 0.73 -0.2
234,877 - H281DRAFT_02109 0.73 -0.9
234,877 - H281DRAFT_02109 0.73 -0.3
234,910 - H281DRAFT_02109 0.76 -2.3
235,226 - -0.1
235,226 - -0.2
235,226 - +0.5
235,229 + +0.4
235,229 + -0.7
235,229 + +0.7
235,230 - -0.3
235,230 - -0.1
235,240 + -0.7
235,241 - +0.1
235,413 + +0.9
235,414 - -0.5
235,831 + H281DRAFT_02110 0.18 +0.6
235,831 + H281DRAFT_02110 0.18 +0.1
235,898 + H281DRAFT_02110 0.20 -0.4
235,899 - H281DRAFT_02110 0.20 -2.1
235,899 - H281DRAFT_02110 0.20 +0.8
235,921 + H281DRAFT_02110 0.21 +0.3
236,011 + H281DRAFT_02110 0.23 +0.6
236,012 - H281DRAFT_02110 0.23 -0.4
236,089 + H281DRAFT_02110 0.25 +0.3
236,089 + H281DRAFT_02110 0.25 -0.3
236,089 + H281DRAFT_02110 0.25 -0.3
236,089 + H281DRAFT_02110 0.25 +0.3
236,090 - H281DRAFT_02110 0.25 -0.1
236,102 - H281DRAFT_02110 0.26 +0.1

Or see this region's nucleotide sequence