Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01677

Experiment: Bu1_100

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01676 and H281DRAFT_01677 are separated by 102 nucleotidesH281DRAFT_01677 and H281DRAFT_01678 are separated by 18 nucleotides H281DRAFT_01676: H281DRAFT_01676 - transcriptional regulator, LysR family, at 560,284 to 561,189 _01676 H281DRAFT_01677: H281DRAFT_01677 - 3-dehydroquinate dehydratase, at 561,292 to 561,729 _01677 H281DRAFT_01678: H281DRAFT_01678 - Predicted dehydrogenase, at 561,748 to 562,800 _01678 Position (kb) 561 562Strain fitness (log2 ratio) -2 -1 0 1at 560.352 kb on - strandat 560.352 kb on - strandat 560.386 kb on - strand, within H281DRAFT_01676at 560.539 kb on + strand, within H281DRAFT_01676at 560.539 kb on + strand, within H281DRAFT_01676at 560.540 kb on - strand, within H281DRAFT_01676at 560.540 kb on - strand, within H281DRAFT_01676at 560.618 kb on + strand, within H281DRAFT_01676at 560.619 kb on - strand, within H281DRAFT_01676at 560.690 kb on + strand, within H281DRAFT_01676at 560.691 kb on - strand, within H281DRAFT_01676at 560.705 kb on + strand, within H281DRAFT_01676at 560.706 kb on - strand, within H281DRAFT_01676at 560.728 kb on + strand, within H281DRAFT_01676at 560.730 kb on + strand, within H281DRAFT_01676at 560.731 kb on - strand, within H281DRAFT_01676at 560.731 kb on - strand, within H281DRAFT_01676at 561.022 kb on - strand, within H281DRAFT_01676at 561.172 kb on + strandat 561.234 kb on - strandat 561.239 kb on + strandat 561.290 kb on + strandat 561.426 kb on + strand, within H281DRAFT_01677at 561.483 kb on + strand, within H281DRAFT_01677at 561.484 kb on - strand, within H281DRAFT_01677at 561.484 kb on - strand, within H281DRAFT_01677at 561.486 kb on - strand, within H281DRAFT_01677at 561.529 kb on - strand, within H281DRAFT_01677at 561.974 kb on + strand, within H281DRAFT_01678at 562.031 kb on + strand, within H281DRAFT_01678at 562.049 kb on + strand, within H281DRAFT_01678at 562.049 kb on + strand, within H281DRAFT_01678at 562.325 kb on + strand, within H281DRAFT_01678

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_100
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560,352 - +0.2
560,352 - +1.1
560,386 - H281DRAFT_01676 0.11 -0.8
560,539 + H281DRAFT_01676 0.28 -0.9
560,539 + H281DRAFT_01676 0.28 -0.8
560,540 - H281DRAFT_01676 0.28 +1.0
560,540 - H281DRAFT_01676 0.28 -1.3
560,618 + H281DRAFT_01676 0.37 -0.1
560,619 - H281DRAFT_01676 0.37 -0.5
560,690 + H281DRAFT_01676 0.45 +0.6
560,691 - H281DRAFT_01676 0.45 +0.1
560,705 + H281DRAFT_01676 0.46 -1.0
560,706 - H281DRAFT_01676 0.47 +1.0
560,728 + H281DRAFT_01676 0.49 +1.3
560,730 + H281DRAFT_01676 0.49 +0.3
560,731 - H281DRAFT_01676 0.49 -1.2
560,731 - H281DRAFT_01676 0.49 -0.7
561,022 - H281DRAFT_01676 0.81 -2.1
561,172 + +0.9
561,234 - -1.3
561,239 + -0.8
561,290 + -0.3
561,426 + H281DRAFT_01677 0.31 -0.9
561,483 + H281DRAFT_01677 0.44 -1.1
561,484 - H281DRAFT_01677 0.44 -0.2
561,484 - H281DRAFT_01677 0.44 -0.8
561,486 - H281DRAFT_01677 0.44 -0.4
561,529 - H281DRAFT_01677 0.54 -1.2
561,974 + H281DRAFT_01678 0.21 -1.0
562,031 + H281DRAFT_01678 0.27 +0.1
562,049 + H281DRAFT_01678 0.29 +0.4
562,049 + H281DRAFT_01678 0.29 -1.6
562,325 + H281DRAFT_01678 0.55 -1.3

Or see this region's nucleotide sequence