Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01410

Experiment: Bu1_100

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01409 and H281DRAFT_01410 are separated by 3 nucleotidesH281DRAFT_01410 and H281DRAFT_01411 are separated by 166 nucleotides H281DRAFT_01409: H281DRAFT_01409 - acetate kinase, at 262,630 to 263,811 _01409 H281DRAFT_01410: H281DRAFT_01410 - phosphate acetyltransferase, at 263,815 to 264,750 _01410 H281DRAFT_01411: H281DRAFT_01411 - hypothetical protein, at 264,917 to 265,420 _01411 Position (kb) 263 264 265Strain fitness (log2 ratio) -3 -2 -1 0 1at 262.907 kb on + strand, within H281DRAFT_01409at 263.428 kb on - strand, within H281DRAFT_01409at 264.305 kb on - strand, within H281DRAFT_01410at 264.729 kb on - strandat 264.741 kb on + strandat 264.859 kb on + strandat 264.949 kb on + strandat 264.999 kb on + strand, within H281DRAFT_01411at 265.021 kb on + strand, within H281DRAFT_01411at 265.149 kb on + strand, within H281DRAFT_01411at 265.415 kb on - strandat 265.415 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_100
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262,907 + H281DRAFT_01409 0.23 +0.5
263,428 - H281DRAFT_01409 0.68 -2.6
264,305 - H281DRAFT_01410 0.52 -1.5
264,729 - +0.9
264,741 + +0.5
264,859 + -0.0
264,949 + -1.2
264,999 + H281DRAFT_01411 0.16 +1.6
265,021 + H281DRAFT_01411 0.21 -2.8
265,149 + H281DRAFT_01411 0.46 -1.0
265,415 - +0.1
265,415 - +0.1

Or see this region's nucleotide sequence