Experiment: Bu1_100
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01337 and H281DRAFT_01338 are separated by 261 nucleotides H281DRAFT_01338 and H281DRAFT_01339 are separated by 179 nucleotides H281DRAFT_01339 and H281DRAFT_01340 overlap by 4 nucleotides
H281DRAFT_01337: H281DRAFT_01337 - 40-residue YVTN family beta-propeller repeat-containing protein, at 178,840 to 179,961
_01337
H281DRAFT_01338: H281DRAFT_01338 - outer membrane transport energization protein ExbB, at 180,223 to 180,939
_01338
H281DRAFT_01339: H281DRAFT_01339 - haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED, at 181,119 to 181,889
_01339
H281DRAFT_01340: H281DRAFT_01340 - phosphoglycolate phosphatase, at 181,886 to 182,578
_01340
Position (kb) 180
181 Strain fitness (log2 ratio) -1
0
1 at 179.234 kb on + strand, within H281DRAFT_01337 at 179.235 kb on - strand, within H281DRAFT_01337 at 179.585 kb on + strand, within H281DRAFT_01337 at 179.585 kb on + strand, within H281DRAFT_01337 at 179.585 kb on + strand, within H281DRAFT_01337 at 179.594 kb on + strand, within H281DRAFT_01337 at 179.841 kb on - strand, within H281DRAFT_01337 at 179.841 kb on - strand, within H281DRAFT_01337 at 179.938 kb on + strand at 180.026 kb on + strand at 180.077 kb on + strand at 180.090 kb on - strand at 180.144 kb on + strand at 180.175 kb on - strand at 180.233 kb on - strand at 180.233 kb on - strand at 180.441 kb on + strand, within H281DRAFT_01338 at 180.707 kb on - strand, within H281DRAFT_01338 at 180.904 kb on + strand at 181.709 kb on - strand, within H281DRAFT_01339 at 181.722 kb on + strand, within H281DRAFT_01339
Per-strain Table
Position Strand Gene LocusTag Fraction Bu1_100 remove 179,234 + H281DRAFT_01337 0.35 +0.5 179,235 - H281DRAFT_01337 0.35 -0.8 179,585 + H281DRAFT_01337 0.66 +0.5 179,585 + H281DRAFT_01337 0.66 -0.0 179,585 + H281DRAFT_01337 0.66 -0.7 179,594 + H281DRAFT_01337 0.67 -1.0 179,841 - H281DRAFT_01337 0.89 +0.7 179,841 - H281DRAFT_01337 0.89 -0.0 179,938 + +0.3 180,026 + -0.4 180,077 + +0.4 180,090 - +0.2 180,144 + -0.1 180,175 - -1.4 180,233 - -1.2 180,233 - -1.0 180,441 + H281DRAFT_01338 0.30 +0.8 180,707 - H281DRAFT_01338 0.68 +0.1 180,904 + +0.9 181,709 - H281DRAFT_01339 0.77 -1.1 181,722 + H281DRAFT_01339 0.78 +0.8
Or see this region's nucleotide sequence