Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01337

Experiment: Bu1_100

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01336 and H281DRAFT_01337 are separated by 74 nucleotidesH281DRAFT_01337 and H281DRAFT_01338 are separated by 261 nucleotides H281DRAFT_01336: H281DRAFT_01336 - Outer membrane receptor proteins, mostly Fe transport, at 176,402 to 178,765 _01336 H281DRAFT_01337: H281DRAFT_01337 - 40-residue YVTN family beta-propeller repeat-containing protein, at 178,840 to 179,961 _01337 H281DRAFT_01338: H281DRAFT_01338 - outer membrane transport energization protein ExbB, at 180,223 to 180,939 _01338 Position (kb) 178 179 180Strain fitness (log2 ratio) -2 -1 0 1at 177.874 kb on + strand, within H281DRAFT_01336at 177.874 kb on + strand, within H281DRAFT_01336at 177.875 kb on - strand, within H281DRAFT_01336at 177.875 kb on - strand, within H281DRAFT_01336at 177.875 kb on - strand, within H281DRAFT_01336at 177.875 kb on - strand, within H281DRAFT_01336at 177.948 kb on - strandat 178.129 kb on + strand, within H281DRAFT_01336at 178.130 kb on - strand, within H281DRAFT_01336at 178.130 kb on - strand, within H281DRAFT_01336at 178.153 kb on - strand, within H281DRAFT_01336at 178.153 kb on - strand, within H281DRAFT_01336at 178.153 kb on - strand, within H281DRAFT_01336at 178.153 kb on - strand, within H281DRAFT_01336at 178.254 kb on + strand, within H281DRAFT_01336at 178.280 kb on + strand, within H281DRAFT_01336at 178.280 kb on + strand, within H281DRAFT_01336at 178.286 kb on + strandat 178.287 kb on - strand, within H281DRAFT_01336at 178.287 kb on - strand, within H281DRAFT_01336at 178.484 kb on + strand, within H281DRAFT_01336at 178.485 kb on - strand, within H281DRAFT_01336at 178.485 kb on - strand, within H281DRAFT_01336at 178.673 kb on - strandat 178.785 kb on + strandat 178.786 kb on - strandat 178.950 kb on - strandat 179.054 kb on + strand, within H281DRAFT_01337at 179.129 kb on + strand, within H281DRAFT_01337at 179.157 kb on + strand, within H281DRAFT_01337at 179.234 kb on + strand, within H281DRAFT_01337at 179.235 kb on - strand, within H281DRAFT_01337at 179.585 kb on + strand, within H281DRAFT_01337at 179.585 kb on + strand, within H281DRAFT_01337at 179.585 kb on + strand, within H281DRAFT_01337at 179.594 kb on + strand, within H281DRAFT_01337at 179.841 kb on - strand, within H281DRAFT_01337at 179.841 kb on - strand, within H281DRAFT_01337at 179.938 kb on + strandat 180.026 kb on + strandat 180.077 kb on + strandat 180.090 kb on - strandat 180.144 kb on + strandat 180.175 kb on - strandat 180.233 kb on - strandat 180.233 kb on - strandat 180.441 kb on + strand, within H281DRAFT_01338at 180.707 kb on - strand, within H281DRAFT_01338at 180.904 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_100
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177,874 + H281DRAFT_01336 0.62 +1.3
177,874 + H281DRAFT_01336 0.62 +0.8
177,875 - H281DRAFT_01336 0.62 -0.5
177,875 - H281DRAFT_01336 0.62 -0.8
177,875 - H281DRAFT_01336 0.62 -1.2
177,875 - H281DRAFT_01336 0.62 -0.1
177,948 - -1.1
178,129 + H281DRAFT_01336 0.73 +0.6
178,130 - H281DRAFT_01336 0.73 -1.4
178,130 - H281DRAFT_01336 0.73 +0.5
178,153 - H281DRAFT_01336 0.74 +0.2
178,153 - H281DRAFT_01336 0.74 +0.3
178,153 - H281DRAFT_01336 0.74 +0.1
178,153 - H281DRAFT_01336 0.74 -0.7
178,254 + H281DRAFT_01336 0.78 -0.5
178,280 + H281DRAFT_01336 0.79 +0.2
178,280 + H281DRAFT_01336 0.79 +0.5
178,286 + +0.7
178,287 - H281DRAFT_01336 0.80 +0.9
178,287 - H281DRAFT_01336 0.80 +0.3
178,484 + H281DRAFT_01336 0.88 -2.1
178,485 - H281DRAFT_01336 0.88 +1.6
178,485 - H281DRAFT_01336 0.88 +0.5
178,673 - +0.2
178,785 + +0.5
178,786 - -1.2
178,950 - +0.1
179,054 + H281DRAFT_01337 0.19 -0.6
179,129 + H281DRAFT_01337 0.26 -0.2
179,157 + H281DRAFT_01337 0.28 -0.3
179,234 + H281DRAFT_01337 0.35 +0.5
179,235 - H281DRAFT_01337 0.35 -0.8
179,585 + H281DRAFT_01337 0.66 +0.5
179,585 + H281DRAFT_01337 0.66 -0.0
179,585 + H281DRAFT_01337 0.66 -0.7
179,594 + H281DRAFT_01337 0.67 -1.0
179,841 - H281DRAFT_01337 0.89 +0.7
179,841 - H281DRAFT_01337 0.89 -0.0
179,938 + +0.3
180,026 + -0.4
180,077 + +0.4
180,090 - +0.2
180,144 + -0.1
180,175 - -1.4
180,233 - -1.2
180,233 - -1.0
180,441 + H281DRAFT_01338 0.30 +0.8
180,707 - H281DRAFT_01338 0.68 +0.1
180,904 + +0.9

Or see this region's nucleotide sequence