Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01217

Experiment: Bu1_100

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01215 and H281DRAFT_01216 are separated by 526 nucleotidesH281DRAFT_01216 and H281DRAFT_01217 are separated by 163 nucleotidesH281DRAFT_01217 and H281DRAFT_01218 are separated by 382 nucleotides H281DRAFT_01215: H281DRAFT_01215 - hypothetical protein, at 54,218 to 54,436 _01215 H281DRAFT_01216: H281DRAFT_01216 - hypothetical protein, at 54,963 to 55,250 _01216 H281DRAFT_01217: H281DRAFT_01217 - bacterial translation initiation factor 1 (bIF-1), at 55,414 to 55,689 _01217 H281DRAFT_01218: H281DRAFT_01218 - response regulator receiver and ANTAR domain protein, at 56,072 to 56,647 _01218 Position (kb) 55 56Strain fitness (log2 ratio) -2 -1 0 1 2at 54.567 kb on - strandat 54.570 kb on + strandat 54.570 kb on + strandat 54.570 kb on + strandat 54.589 kb on - strandat 54.595 kb on - strandat 54.946 kb on + strandat 54.946 kb on + strandat 54.947 kb on - strandat 54.947 kb on - strandat 54.956 kb on + strandat 54.956 kb on + strandat 54.957 kb on - strandat 54.960 kb on + strandat 54.960 kb on + strandat 54.960 kb on + strandat 54.960 kb on + strandat 54.960 kb on + strandat 54.961 kb on - strandat 54.961 kb on - strandat 54.961 kb on - strandat 54.961 kb on - strandat 54.962 kb on + strandat 54.962 kb on + strandat 54.962 kb on + strandat 54.962 kb on + strandat 54.963 kb on - strandat 54.963 kb on - strandat 54.963 kb on - strandat 54.963 kb on - strandat 54.963 kb on - strandat 54.963 kb on - strandat 54.968 kb on + strandat 54.968 kb on + strandat 54.968 kb on + strandat 54.969 kb on - strandat 54.991 kb on - strandat 54.991 kb on - strandat 54.991 kb on - strandat 55.000 kb on - strand, within H281DRAFT_01216at 55.071 kb on + strand, within H281DRAFT_01216at 55.143 kb on + strand, within H281DRAFT_01216at 55.143 kb on + strand, within H281DRAFT_01216at 55.282 kb on + strandat 55.282 kb on + strandat 55.295 kb on + strandat 55.351 kb on + strandat 55.409 kb on + strandat 55.409 kb on + strandat 55.410 kb on - strandat 55.506 kb on - strand, within H281DRAFT_01217at 55.506 kb on - strand, within H281DRAFT_01217at 55.516 kb on + strand, within H281DRAFT_01217at 55.516 kb on + strand, within H281DRAFT_01217at 55.546 kb on - strand, within H281DRAFT_01217at 56.002 kb on + strandat 56.003 kb on - strandat 56.003 kb on - strandat 56.028 kb on - strandat 56.066 kb on + strandat 56.067 kb on - strandat 56.121 kb on + strandat 56.122 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_100
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54,567 - +1.3
54,570 + +0.7
54,570 + +1.6
54,570 + +0.1
54,589 - +0.8
54,595 - -0.4
54,946 + -1.9
54,946 + +0.1
54,947 - +0.4
54,947 - +0.9
54,956 + -2.2
54,956 + +0.9
54,957 - -0.4
54,960 + +2.1
54,960 + -0.7
54,960 + +0.1
54,960 + +0.3
54,960 + -0.5
54,961 - -0.8
54,961 - -1.0
54,961 - +0.7
54,961 - +0.2
54,962 + +0.5
54,962 + -0.8
54,962 + -0.4
54,962 + -0.3
54,963 - +0.9
54,963 - +0.1
54,963 - +1.3
54,963 - +0.2
54,963 - +1.3
54,963 - +0.5
54,968 + +0.3
54,968 + -1.0
54,968 + +0.5
54,969 - +0.5
54,991 - -0.8
54,991 - -0.2
54,991 - +0.5
55,000 - H281DRAFT_01216 0.13 +1.3
55,071 + H281DRAFT_01216 0.38 -0.9
55,143 + H281DRAFT_01216 0.62 -0.2
55,143 + H281DRAFT_01216 0.62 -1.5
55,282 + +0.1
55,282 + +0.0
55,295 + -2.3
55,351 + +1.2
55,409 + +1.8
55,409 + +0.8
55,410 - +1.7
55,506 - H281DRAFT_01217 0.33 +0.7
55,506 - H281DRAFT_01217 0.33 +2.0
55,516 + H281DRAFT_01217 0.37 +0.8
55,516 + H281DRAFT_01217 0.37 +0.3
55,546 - H281DRAFT_01217 0.48 -0.3
56,002 + +1.2
56,003 - -0.2
56,003 - -0.7
56,028 - +1.3
56,066 + -1.1
56,067 - +0.2
56,121 + +0.3
56,122 - -2.0

Or see this region's nucleotide sequence