Experiment: Bu1_100
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01082 and H281DRAFT_01083 are separated by 169 nucleotides H281DRAFT_01083 and H281DRAFT_01084 overlap by 28 nucleotides H281DRAFT_01084 and H281DRAFT_01085 are separated by 87 nucleotides
H281DRAFT_01082: H281DRAFT_01082 - putrescine aminotransferase, at 1,215,091 to 1,216,527
_01082
H281DRAFT_01083: H281DRAFT_01083 - hypothetical protein, at 1,216,697 to 1,217,158
_01083
H281DRAFT_01084: H281DRAFT_01084 - transcriptional regulator, LysR family, at 1,217,131 to 1,218,012
_01084
H281DRAFT_01085: H281DRAFT_01085 - Membrane protein TerC, possibly involved in tellurium resistance, at 1,218,100 to 1,218,897
_01085
Position (kb)
1216
1217
1218 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1215.732 kb on + strand, within H281DRAFT_01082 at 1215.826 kb on - strand, within H281DRAFT_01082 at 1215.878 kb on - strand at 1216.607 kb on - strand at 1216.738 kb on + strand at 1216.992 kb on + strand, within H281DRAFT_01083 at 1216.993 kb on - strand, within H281DRAFT_01083 at 1217.022 kb on - strand, within H281DRAFT_01083 at 1217.022 kb on - strand, within H281DRAFT_01083 at 1218.003 kb on - strand at 1218.014 kb on + strand at 1218.130 kb on - strand at 1218.139 kb on + strand at 1218.140 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bu1_100 remove 1,215,732 + H281DRAFT_01082 0.45 -0.6 1,215,826 - H281DRAFT_01082 0.51 -0.8 1,215,878 - +1.4 1,216,607 - +1.3 1,216,738 + +0.5 1,216,992 + H281DRAFT_01083 0.64 +0.5 1,216,993 - H281DRAFT_01083 0.64 -3.0 1,217,022 - H281DRAFT_01083 0.70 -1.0 1,217,022 - H281DRAFT_01083 0.70 -1.5 1,218,003 - +0.8 1,218,014 + -0.6 1,218,130 - +0.7 1,218,139 + +0.4 1,218,140 - -0.1
Or see this region's nucleotide sequence