Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01083

Experiment: Bu1_100

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01082 and H281DRAFT_01083 are separated by 169 nucleotidesH281DRAFT_01083 and H281DRAFT_01084 overlap by 28 nucleotidesH281DRAFT_01084 and H281DRAFT_01085 are separated by 87 nucleotides H281DRAFT_01082: H281DRAFT_01082 - putrescine aminotransferase, at 1,215,091 to 1,216,527 _01082 H281DRAFT_01083: H281DRAFT_01083 - hypothetical protein, at 1,216,697 to 1,217,158 _01083 H281DRAFT_01084: H281DRAFT_01084 - transcriptional regulator, LysR family, at 1,217,131 to 1,218,012 _01084 H281DRAFT_01085: H281DRAFT_01085 - Membrane protein TerC, possibly involved in tellurium resistance, at 1,218,100 to 1,218,897 _01085 Position (kb) 1216 1217 1218Strain fitness (log2 ratio) -3 -2 -1 0 1at 1215.732 kb on + strand, within H281DRAFT_01082at 1215.826 kb on - strand, within H281DRAFT_01082at 1215.878 kb on - strandat 1216.607 kb on - strandat 1216.738 kb on + strandat 1216.992 kb on + strand, within H281DRAFT_01083at 1216.993 kb on - strand, within H281DRAFT_01083at 1217.022 kb on - strand, within H281DRAFT_01083at 1217.022 kb on - strand, within H281DRAFT_01083at 1218.003 kb on - strandat 1218.014 kb on + strandat 1218.130 kb on - strandat 1218.139 kb on + strandat 1218.140 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_100
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1,215,732 + H281DRAFT_01082 0.45 -0.6
1,215,826 - H281DRAFT_01082 0.51 -0.8
1,215,878 - +1.4
1,216,607 - +1.3
1,216,738 + +0.5
1,216,992 + H281DRAFT_01083 0.64 +0.5
1,216,993 - H281DRAFT_01083 0.64 -3.0
1,217,022 - H281DRAFT_01083 0.70 -1.0
1,217,022 - H281DRAFT_01083 0.70 -1.5
1,218,003 - +0.8
1,218,014 + -0.6
1,218,130 - +0.7
1,218,139 + +0.4
1,218,140 - -0.1

Or see this region's nucleotide sequence