Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01035

Experiment: Bu1_100

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01034 and H281DRAFT_01035 are separated by 630 nucleotidesH281DRAFT_01035 and H281DRAFT_01036 are separated by 282 nucleotides H281DRAFT_01034: H281DRAFT_01034 - Outer membrane protein (porin), at 1,162,000 to 1,162,827 _01034 H281DRAFT_01035: H281DRAFT_01035 - TPR repeat-containing protein, at 1,163,458 to 1,164,300 _01035 H281DRAFT_01036: H281DRAFT_01036 - DNA ligase D, ligase domain-containing protein, at 1,164,583 to 1,165,431 _01036 Position (kb) 1163 1164 1165Strain fitness (log2 ratio) -2 -1 0 1 2at 1163.039 kb on - strandat 1163.575 kb on + strandat 1163.737 kb on + strand, within H281DRAFT_01035at 1164.629 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_100
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1,163,039 - -1.8
1,163,575 + +2.1
1,163,737 + H281DRAFT_01035 0.33 +0.3
1,164,629 + -1.9

Or see this region's nucleotide sequence