Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00603

Experiment: Bu1_100

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00602 and H281DRAFT_00603 are separated by 116 nucleotidesH281DRAFT_00603 and H281DRAFT_00604 are separated by 184 nucleotides H281DRAFT_00602: H281DRAFT_00602 - condensin subunit Smc, at 671,567 to 675,085 _00602 H281DRAFT_00603: H281DRAFT_00603 - ZipA, C-terminal FtsZ-binding domain, at 675,202 to 676,530 _00603 H281DRAFT_00604: H281DRAFT_00604 - DNA ligase (NAD+), at 676,715 to 678,781 _00604 Position (kb) 675 676 677Strain fitness (log2 ratio) -2 -1 0 1 2at 675.077 kb on - strandat 675.178 kb on + strandat 675.496 kb on - strand, within H281DRAFT_00603at 675.538 kb on + strand, within H281DRAFT_00603at 675.838 kb on - strand, within H281DRAFT_00603at 675.977 kb on + strand, within H281DRAFT_00603at 675.978 kb on - strandat 676.132 kb on + strand, within H281DRAFT_00603at 676.270 kb on + strandat 676.344 kb on + strand, within H281DRAFT_00603at 676.528 kb on + strandat 676.614 kb on + strandat 676.654 kb on + strandat 676.654 kb on + strandat 676.655 kb on - strandat 676.655 kb on - strandat 676.709 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_100
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675,077 - -1.1
675,178 + -0.6
675,496 - H281DRAFT_00603 0.22 -1.7
675,538 + H281DRAFT_00603 0.25 +1.0
675,838 - H281DRAFT_00603 0.48 -2.7
675,977 + H281DRAFT_00603 0.58 -2.4
675,978 - -0.3
676,132 + H281DRAFT_00603 0.70 -1.7
676,270 + +2.0
676,344 + H281DRAFT_00603 0.86 -1.4
676,528 + +1.2
676,614 + +1.2
676,654 + +0.2
676,654 + +1.2
676,655 - -0.3
676,655 - +1.2
676,709 + -2.5

Or see this region's nucleotide sequence