Experiment: Bu1_100
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00558 and H281DRAFT_00559 are separated by 332 nucleotides H281DRAFT_00559 and H281DRAFT_00560 are separated by 295 nucleotides
H281DRAFT_00558: H281DRAFT_00558 - transcriptional regulator, GntR family, at 627,090 to 627,923
_00558
H281DRAFT_00559: H281DRAFT_00559 - hypothetical protein, at 628,256 to 628,603
_00559
H281DRAFT_00560: H281DRAFT_00560 - microcin C transport system substrate-binding protein, at 628,899 to 630,854
_00560
Position (kb) 628
629 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 627.321 kb on + strand, within H281DRAFT_00558 at 627.321 kb on + strand, within H281DRAFT_00558 at 627.322 kb on - strand, within H281DRAFT_00558 at 627.351 kb on + strand, within H281DRAFT_00558 at 627.387 kb on + strand, within H281DRAFT_00558 at 627.388 kb on - strand at 627.649 kb on + strand, within H281DRAFT_00558 at 627.805 kb on + strand, within H281DRAFT_00558 at 627.876 kb on + strand at 627.876 kb on + strand at 627.940 kb on - strand at 627.959 kb on - strand at 627.962 kb on - strand at 627.997 kb on + strand at 627.997 kb on + strand at 627.998 kb on - strand at 627.998 kb on - strand at 628.001 kb on + strand at 628.168 kb on + strand at 628.169 kb on - strand at 628.183 kb on - strand at 628.195 kb on + strand at 628.374 kb on - strand, within H281DRAFT_00559 at 628.395 kb on - strand, within H281DRAFT_00559 at 628.430 kb on + strand, within H281DRAFT_00559 at 628.785 kb on + strand at 628.854 kb on - strand at 629.077 kb on - strand at 629.106 kb on + strand, within H281DRAFT_00560 at 629.134 kb on - strand at 629.421 kb on + strand, within H281DRAFT_00560 at 629.421 kb on + strand, within H281DRAFT_00560
Per-strain Table
Position Strand Gene LocusTag Fraction Bu1_100 remove 627,321 + H281DRAFT_00558 0.28 -2.1 627,321 + H281DRAFT_00558 0.28 -1.9 627,322 - H281DRAFT_00558 0.28 -0.2 627,351 + H281DRAFT_00558 0.31 -0.0 627,387 + H281DRAFT_00558 0.36 -2.9 627,388 - +1.0 627,649 + H281DRAFT_00558 0.67 -0.0 627,805 + H281DRAFT_00558 0.86 -0.5 627,876 + -0.6 627,876 + +0.4 627,940 - +0.9 627,959 - -0.0 627,962 - -0.0 627,997 + +0.7 627,997 + -0.3 627,998 - +1.0 627,998 - +0.1 628,001 + +2.2 628,168 + +1.0 628,169 - +2.0 628,183 - +1.1 628,195 + +0.3 628,374 - H281DRAFT_00559 0.34 -0.7 628,395 - H281DRAFT_00559 0.40 -1.2 628,430 + H281DRAFT_00559 0.50 -1.2 628,785 + +0.6 628,854 - -0.7 629,077 - -0.1 629,106 + H281DRAFT_00560 0.11 +1.5 629,134 - +3.0 629,421 + H281DRAFT_00560 0.27 -0.0 629,421 + H281DRAFT_00560 0.27 +0.6
Or see this region's nucleotide sequence