Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00413

Experiment: Bu1_100

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00412 and H281DRAFT_00413 are separated by 14 nucleotidesH281DRAFT_00413 and H281DRAFT_00414 are separated by 22 nucleotidesH281DRAFT_00414 and H281DRAFT_00415 are separated by 44 nucleotides H281DRAFT_00412: H281DRAFT_00412 - Predicted arabinose efflux permease, MFS family, at 453,491 to 454,861 _00412 H281DRAFT_00413: H281DRAFT_00413 - Protein of unknown function (DUF2569), at 454,876 to 455,373 _00413 H281DRAFT_00414: H281DRAFT_00414 - 3',5'-cyclic AMP phosphodiesterase CpdA, at 455,396 to 456,223 _00414 H281DRAFT_00415: H281DRAFT_00415 - putative spermidine/putrescine transport system ATP-binding protein, at 456,268 to 457,356 _00415 Position (kb) 454 455 456Strain fitness (log2 ratio) -2 -1 0 1at 454.005 kb on - strand, within H281DRAFT_00412at 454.175 kb on + strand, within H281DRAFT_00412at 454.194 kb on + strandat 454.590 kb on + strand, within H281DRAFT_00412at 454.591 kb on - strand, within H281DRAFT_00412at 454.591 kb on - strand, within H281DRAFT_00412at 454.591 kb on - strand, within H281DRAFT_00412at 455.208 kb on - strand, within H281DRAFT_00413at 455.239 kb on + strand, within H281DRAFT_00413at 455.240 kb on - strand, within H281DRAFT_00413at 455.379 kb on - strandat 455.457 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_100
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454,005 - H281DRAFT_00412 0.37 +0.5
454,175 + H281DRAFT_00412 0.50 +0.5
454,194 + -0.0
454,590 + H281DRAFT_00412 0.80 -2.0
454,591 - H281DRAFT_00412 0.80 -1.1
454,591 - H281DRAFT_00412 0.80 +0.3
454,591 - H281DRAFT_00412 0.80 +0.5
455,208 - H281DRAFT_00413 0.67 +1.5
455,239 + H281DRAFT_00413 0.73 -2.5
455,240 - H281DRAFT_00413 0.73 -2.0
455,379 - -0.4
455,457 + +1.3

Or see this region's nucleotide sequence