Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00358

Experiment: Bu1_100

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00356 and H281DRAFT_00357 are separated by 43 nucleotidesH281DRAFT_00357 and H281DRAFT_00358 are separated by 217 nucleotidesH281DRAFT_00358 and H281DRAFT_00359 are separated by 167 nucleotides H281DRAFT_00356: H281DRAFT_00356 - acetolactate synthase, large subunit, at 388,873 to 390,738 _00356 H281DRAFT_00357: H281DRAFT_00357 - transcriptional regulator, ArsR family, at 390,782 to 391,081 _00357 H281DRAFT_00358: H281DRAFT_00358 - Aldo/keto reductase, at 391,299 to 392,237 _00358 H281DRAFT_00359: H281DRAFT_00359 - Acyl-CoA dehydrogenase, at 392,405 to 393,535 _00359 Position (kb) 391 392 393Strain fitness (log2 ratio) -2 -1 0 1 2at 390.422 kb on - strand, within H281DRAFT_00356at 390.432 kb on + strand, within H281DRAFT_00356at 390.624 kb on - strandat 390.624 kb on - strandat 390.806 kb on - strandat 391.151 kb on - strandat 391.719 kb on + strand, within H281DRAFT_00358at 391.719 kb on + strand, within H281DRAFT_00358at 391.720 kb on - strand, within H281DRAFT_00358at 391.720 kb on - strand, within H281DRAFT_00358at 391.795 kb on + strand, within H281DRAFT_00358at 392.522 kb on + strand, within H281DRAFT_00359

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Per-strain Table

Position Strand Gene LocusTag Fraction Bu1_100
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390,422 - H281DRAFT_00356 0.83 +0.7
390,432 + H281DRAFT_00356 0.84 +1.0
390,624 - -0.3
390,624 - +2.0
390,806 - -0.8
391,151 - +0.5
391,719 + H281DRAFT_00358 0.45 -0.3
391,719 + H281DRAFT_00358 0.45 -1.1
391,720 - H281DRAFT_00358 0.45 +0.6
391,720 - H281DRAFT_00358 0.45 +0.5
391,795 + H281DRAFT_00358 0.53 -0.2
392,522 + H281DRAFT_00359 0.10 -2.0

Or see this region's nucleotide sequence