Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c06660

Experiment: marine broth 25C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c06640 and PGA1_c06650 are separated by 178 nucleotidesPGA1_c06650 and PGA1_c06660 are separated by 19 nucleotidesPGA1_c06660 and PGA1_c06670 are separated by 136 nucleotides PGA1_c06640: PGA1_c06640 - putative pyrimidine 5'-nucleotidase, at 680,947 to 681,588 _c06640 PGA1_c06650: PGA1_c06650 - transcriptional regulator, GntR family, at 681,767 to 682,420 _c06650 PGA1_c06660: PGA1_c06660 - glycosyl transferase-like protein, at 682,440 to 684,380 _c06660 PGA1_c06670: PGA1_c06670 - carbamoyl-phosphate synthase small chain, at 684,517 to 685,680 _c06670 Position (kb) 682 683 684 685Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 681.445 kb on + strand, within PGA1_c06640at 681.453 kb on - strand, within PGA1_c06640at 681.522 kb on + strand, within PGA1_c06640at 681.584 kb on + strandat 681.598 kb on - strandat 681.611 kb on - strandat 681.611 kb on - strandat 681.637 kb on + strandat 681.637 kb on + strandat 681.637 kb on + strandat 681.637 kb on + strandat 681.637 kb on + strandat 681.637 kb on + strandat 681.645 kb on - strandat 681.645 kb on - strandat 681.645 kb on - strandat 681.645 kb on - strandat 681.645 kb on - strandat 681.645 kb on - strandat 681.669 kb on + strandat 681.691 kb on - strandat 681.691 kb on - strandat 681.699 kb on - strandat 681.710 kb on - strandat 681.730 kb on + strandat 681.736 kb on - strandat 681.760 kb on - strandat 681.813 kb on + strandat 681.922 kb on - strand, within PGA1_c06650at 682.032 kb on + strand, within PGA1_c06650at 682.138 kb on + strand, within PGA1_c06650at 682.138 kb on + strand, within PGA1_c06650at 682.146 kb on - strand, within PGA1_c06650at 682.220 kb on - strand, within PGA1_c06650at 682.292 kb on + strand, within PGA1_c06650at 682.415 kb on + strandat 682.415 kb on + strandat 682.423 kb on - strandat 682.423 kb on - strandat 682.440 kb on - strandat 682.481 kb on + strandat 682.844 kb on + strand, within PGA1_c06660at 682.844 kb on + strand, within PGA1_c06660at 682.847 kb on + strand, within PGA1_c06660at 682.899 kb on + strand, within PGA1_c06660at 682.987 kb on - strand, within PGA1_c06660at 683.024 kb on + strand, within PGA1_c06660at 683.032 kb on - strand, within PGA1_c06660at 683.086 kb on - strand, within PGA1_c06660at 683.086 kb on - strand, within PGA1_c06660at 683.197 kb on + strand, within PGA1_c06660at 683.199 kb on - strand, within PGA1_c06660at 683.199 kb on - strand, within PGA1_c06660at 683.260 kb on + strand, within PGA1_c06660at 683.410 kb on + strand, within PGA1_c06660at 683.422 kb on - strand, within PGA1_c06660at 683.473 kb on + strand, within PGA1_c06660at 683.602 kb on + strand, within PGA1_c06660at 683.610 kb on - strand, within PGA1_c06660at 683.629 kb on + strand, within PGA1_c06660at 683.631 kb on + strand, within PGA1_c06660at 683.631 kb on + strand, within PGA1_c06660at 683.639 kb on - strand, within PGA1_c06660at 683.650 kb on + strand, within PGA1_c06660at 683.668 kb on - strand, within PGA1_c06660at 683.727 kb on - strand, within PGA1_c06660at 683.729 kb on - strand, within PGA1_c06660at 683.729 kb on - strand, within PGA1_c06660at 683.738 kb on + strand, within PGA1_c06660at 683.757 kb on + strand, within PGA1_c06660at 683.797 kb on - strand, within PGA1_c06660at 683.797 kb on - strand, within PGA1_c06660at 683.797 kb on - strand, within PGA1_c06660at 683.822 kb on + strand, within PGA1_c06660at 683.846 kb on + strand, within PGA1_c06660at 683.848 kb on - strand, within PGA1_c06660at 683.849 kb on - strand, within PGA1_c06660at 683.849 kb on - strand, within PGA1_c06660at 683.939 kb on - strand, within PGA1_c06660at 683.999 kb on + strand, within PGA1_c06660at 684.007 kb on - strand, within PGA1_c06660at 684.085 kb on - strand, within PGA1_c06660at 684.232 kb on + strandat 684.328 kb on + strandat 684.328 kb on + strandat 684.359 kb on + strandat 684.359 kb on + strandat 684.359 kb on + strandat 684.359 kb on + strandat 684.359 kb on + strandat 684.367 kb on - strandat 684.367 kb on - strandat 684.367 kb on - strandat 684.367 kb on - strandat 684.367 kb on - strandat 684.367 kb on - strandat 684.367 kb on - strandat 684.367 kb on - strandat 684.367 kb on - strandat 684.369 kb on + strandat 684.371 kb on + strandat 684.377 kb on - strandat 684.388 kb on - strandat 684.399 kb on + strandat 684.399 kb on + strandat 684.407 kb on - strandat 684.445 kb on - strandat 684.455 kb on - strandat 684.494 kb on + strandat 684.499 kb on + strandat 684.507 kb on - strandat 684.507 kb on - strandat 684.523 kb on - strandat 684.572 kb on - strandat 684.590 kb on - strandat 684.681 kb on + strand, within PGA1_c06670at 684.699 kb on + strand, within PGA1_c06670at 684.700 kb on + strand, within PGA1_c06670at 684.707 kb on - strand, within PGA1_c06670at 684.739 kb on + strand, within PGA1_c06670at 684.739 kb on + strand, within PGA1_c06670at 684.987 kb on + strand, within PGA1_c06670at 685.093 kb on - strand, within PGA1_c06670at 685.124 kb on + strand, within PGA1_c06670at 685.374 kb on + strand, within PGA1_c06670

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth 25C
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681,445 + PGA1_c06640 0.78 +1.1
681,453 - PGA1_c06640 0.79 -1.1
681,522 + PGA1_c06640 0.90 +0.4
681,584 + -1.4
681,598 - +1.6
681,611 - -1.4
681,611 - -0.3
681,637 + -0.0
681,637 + -2.2
681,637 + -3.3
681,637 + -0.1
681,637 + -0.8
681,637 + +1.0
681,645 - +0.4
681,645 - -0.1
681,645 - -1.8
681,645 - -1.4
681,645 - +0.1
681,645 - +1.0
681,669 + +1.0
681,691 - -0.4
681,691 - -0.4
681,699 - -1.8
681,710 - -0.3
681,730 + +0.6
681,736 - +0.8
681,760 - +0.4
681,813 + -1.3
681,922 - PGA1_c06650 0.24 +2.6
682,032 + PGA1_c06650 0.41 +0.1
682,138 + PGA1_c06650 0.57 -0.1
682,138 + PGA1_c06650 0.57 -2.6
682,146 - PGA1_c06650 0.58 -0.2
682,220 - PGA1_c06650 0.69 -0.5
682,292 + PGA1_c06650 0.80 +0.8
682,415 + +1.1
682,415 + +0.8
682,423 - +1.2
682,423 - +1.0
682,440 - +0.8
682,481 + +0.4
682,844 + PGA1_c06660 0.21 -0.8
682,844 + PGA1_c06660 0.21 -0.3
682,847 + PGA1_c06660 0.21 -0.5
682,899 + PGA1_c06660 0.24 -0.9
682,987 - PGA1_c06660 0.28 +0.4
683,024 + PGA1_c06660 0.30 +0.1
683,032 - PGA1_c06660 0.30 -0.3
683,086 - PGA1_c06660 0.33 -0.9
683,086 - PGA1_c06660 0.33 +1.0
683,197 + PGA1_c06660 0.39 -0.3
683,199 - PGA1_c06660 0.39 -1.0
683,199 - PGA1_c06660 0.39 -0.6
683,260 + PGA1_c06660 0.42 +0.1
683,410 + PGA1_c06660 0.50 +1.1
683,422 - PGA1_c06660 0.51 -0.5
683,473 + PGA1_c06660 0.53 +0.6
683,602 + PGA1_c06660 0.60 +0.8
683,610 - PGA1_c06660 0.60 -0.1
683,629 + PGA1_c06660 0.61 -1.2
683,631 + PGA1_c06660 0.61 -1.0
683,631 + PGA1_c06660 0.61 -1.5
683,639 - PGA1_c06660 0.62 -0.1
683,650 + PGA1_c06660 0.62 +1.0
683,668 - PGA1_c06660 0.63 +0.1
683,727 - PGA1_c06660 0.66 -0.0
683,729 - PGA1_c06660 0.66 -1.0
683,729 - PGA1_c06660 0.66 -0.0
683,738 + PGA1_c06660 0.67 +0.2
683,757 + PGA1_c06660 0.68 +0.6
683,797 - PGA1_c06660 0.70 -2.3
683,797 - PGA1_c06660 0.70 +0.4
683,797 - PGA1_c06660 0.70 -0.0
683,822 + PGA1_c06660 0.71 +0.3
683,846 + PGA1_c06660 0.72 +1.0
683,848 - PGA1_c06660 0.73 +0.5
683,849 - PGA1_c06660 0.73 -0.6
683,849 - PGA1_c06660 0.73 -0.3
683,939 - PGA1_c06660 0.77 -1.0
683,999 + PGA1_c06660 0.80 +0.5
684,007 - PGA1_c06660 0.81 +0.8
684,085 - PGA1_c06660 0.85 +0.7
684,232 + +0.2
684,328 + -0.0
684,328 + -0.7
684,359 + -1.3
684,359 + +0.2
684,359 + -0.8
684,359 + -0.3
684,359 + -0.2
684,367 - -2.3
684,367 - -0.1
684,367 - -0.4
684,367 - -0.7
684,367 - -0.0
684,367 - -0.6
684,367 - +0.7
684,367 - -0.7
684,367 - -0.9
684,369 + -0.4
684,371 + +2.4
684,377 - -0.0
684,388 - +0.1
684,399 + -0.5
684,399 + -0.9
684,407 - +0.4
684,445 - -0.0
684,455 - +0.6
684,494 + +0.2
684,499 + +0.3
684,507 - +0.0
684,507 - +0.6
684,523 - +1.0
684,572 - -2.7
684,590 - -2.3
684,681 + PGA1_c06670 0.14 -1.8
684,699 + PGA1_c06670 0.16 -0.6
684,700 + PGA1_c06670 0.16 -2.8
684,707 - PGA1_c06670 0.16 -2.6
684,739 + PGA1_c06670 0.19 -0.0
684,739 + PGA1_c06670 0.19 -1.6
684,987 + PGA1_c06670 0.40 -1.0
685,093 - PGA1_c06670 0.49 -2.2
685,124 + PGA1_c06670 0.52 -1.0
685,374 + PGA1_c06670 0.74 -1.0

Or see this region's nucleotide sequence