Experiment: marine broth 25C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06630 and PGA1_c06640 are separated by 177 nucleotides PGA1_c06640 and PGA1_c06650 are separated by 178 nucleotides PGA1_c06650 and PGA1_c06660 are separated by 19 nucleotides
PGA1_c06630: PGA1_c06630 - hypothetical protein, at 680,524 to 680,769
_c06630
PGA1_c06640: PGA1_c06640 - putative pyrimidine 5'-nucleotidase, at 680,947 to 681,588
_c06640
PGA1_c06650: PGA1_c06650 - transcriptional regulator, GntR family, at 681,767 to 682,420
_c06650
PGA1_c06660: PGA1_c06660 - glycosyl transferase-like protein, at 682,440 to 684,380
_c06660
Position (kb) 681
682
683 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 680.779 kb on + strand at 680.787 kb on - strand at 680.787 kb on - strand at 680.788 kb on - strand at 680.803 kb on + strand at 680.827 kb on - strand at 680.945 kb on + strand at 680.953 kb on - strand at 680.967 kb on + strand at 681.034 kb on + strand, within PGA1_c06640 at 681.085 kb on - strand, within PGA1_c06640 at 681.085 kb on - strand, within PGA1_c06640 at 681.101 kb on + strand, within PGA1_c06640 at 681.201 kb on + strand, within PGA1_c06640 at 681.207 kb on - strand, within PGA1_c06640 at 681.209 kb on - strand, within PGA1_c06640 at 681.218 kb on + strand, within PGA1_c06640 at 681.218 kb on + strand, within PGA1_c06640 at 681.218 kb on + strand, within PGA1_c06640 at 681.218 kb on + strand, within PGA1_c06640 at 681.226 kb on - strand, within PGA1_c06640 at 681.226 kb on - strand, within PGA1_c06640 at 681.281 kb on + strand, within PGA1_c06640 at 681.281 kb on + strand, within PGA1_c06640 at 681.289 kb on - strand, within PGA1_c06640 at 681.289 kb on - strand, within PGA1_c06640 at 681.381 kb on + strand, within PGA1_c06640 at 681.445 kb on + strand, within PGA1_c06640 at 681.453 kb on - strand, within PGA1_c06640 at 681.522 kb on + strand, within PGA1_c06640 at 681.584 kb on + strand at 681.598 kb on - strand at 681.611 kb on - strand at 681.611 kb on - strand at 681.637 kb on + strand at 681.637 kb on + strand at 681.637 kb on + strand at 681.637 kb on + strand at 681.637 kb on + strand at 681.637 kb on + strand at 681.645 kb on - strand at 681.645 kb on - strand at 681.645 kb on - strand at 681.645 kb on - strand at 681.645 kb on - strand at 681.645 kb on - strand at 681.669 kb on + strand at 681.691 kb on - strand at 681.691 kb on - strand at 681.699 kb on - strand at 681.710 kb on - strand at 681.730 kb on + strand at 681.736 kb on - strand at 681.760 kb on - strand at 681.813 kb on + strand at 681.922 kb on - strand, within PGA1_c06650 at 682.032 kb on + strand, within PGA1_c06650 at 682.138 kb on + strand, within PGA1_c06650 at 682.138 kb on + strand, within PGA1_c06650 at 682.146 kb on - strand, within PGA1_c06650 at 682.220 kb on - strand, within PGA1_c06650 at 682.292 kb on + strand, within PGA1_c06650 at 682.415 kb on + strand at 682.415 kb on + strand at 682.423 kb on - strand at 682.423 kb on - strand at 682.440 kb on - strand at 682.481 kb on + strand at 682.844 kb on + strand, within PGA1_c06660 at 682.844 kb on + strand, within PGA1_c06660 at 682.847 kb on + strand, within PGA1_c06660 at 682.899 kb on + strand, within PGA1_c06660 at 682.987 kb on - strand, within PGA1_c06660 at 683.024 kb on + strand, within PGA1_c06660 at 683.032 kb on - strand, within PGA1_c06660 at 683.086 kb on - strand, within PGA1_c06660 at 683.086 kb on - strand, within PGA1_c06660 at 683.197 kb on + strand, within PGA1_c06660 at 683.199 kb on - strand, within PGA1_c06660 at 683.199 kb on - strand, within PGA1_c06660 at 683.260 kb on + strand, within PGA1_c06660 at 683.410 kb on + strand, within PGA1_c06660
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth 25C remove 680,779 + +0.8 680,787 - -1.0 680,787 - -1.1 680,788 - +0.1 680,803 + -0.8 680,827 - -0.3 680,945 + -1.1 680,953 - +0.4 680,967 + +0.0 681,034 + PGA1_c06640 0.14 -0.3 681,085 - PGA1_c06640 0.21 +0.4 681,085 - PGA1_c06640 0.21 -0.3 681,101 + PGA1_c06640 0.24 +0.6 681,201 + PGA1_c06640 0.40 -1.2 681,207 - PGA1_c06640 0.40 -0.5 681,209 - PGA1_c06640 0.41 -1.0 681,218 + PGA1_c06640 0.42 -1.2 681,218 + PGA1_c06640 0.42 -2.2 681,218 + PGA1_c06640 0.42 -1.3 681,218 + PGA1_c06640 0.42 +0.5 681,226 - PGA1_c06640 0.43 -0.7 681,226 - PGA1_c06640 0.43 -0.2 681,281 + PGA1_c06640 0.52 -0.9 681,281 + PGA1_c06640 0.52 -2.2 681,289 - PGA1_c06640 0.53 -0.8 681,289 - PGA1_c06640 0.53 -0.5 681,381 + PGA1_c06640 0.68 -0.0 681,445 + PGA1_c06640 0.78 +1.1 681,453 - PGA1_c06640 0.79 -1.1 681,522 + PGA1_c06640 0.90 +0.4 681,584 + -1.4 681,598 - +1.6 681,611 - -1.4 681,611 - -0.3 681,637 + -0.0 681,637 + -2.2 681,637 + -3.3 681,637 + -0.1 681,637 + -0.8 681,637 + +1.0 681,645 - +0.4 681,645 - -0.1 681,645 - -1.8 681,645 - -1.4 681,645 - +0.1 681,645 - +1.0 681,669 + +1.0 681,691 - -0.4 681,691 - -0.4 681,699 - -1.8 681,710 - -0.3 681,730 + +0.6 681,736 - +0.8 681,760 - +0.4 681,813 + -1.3 681,922 - PGA1_c06650 0.24 +2.6 682,032 + PGA1_c06650 0.41 +0.1 682,138 + PGA1_c06650 0.57 -0.1 682,138 + PGA1_c06650 0.57 -2.6 682,146 - PGA1_c06650 0.58 -0.2 682,220 - PGA1_c06650 0.69 -0.5 682,292 + PGA1_c06650 0.80 +0.8 682,415 + +1.1 682,415 + +0.8 682,423 - +1.2 682,423 - +1.0 682,440 - +0.8 682,481 + +0.4 682,844 + PGA1_c06660 0.21 -0.8 682,844 + PGA1_c06660 0.21 -0.3 682,847 + PGA1_c06660 0.21 -0.5 682,899 + PGA1_c06660 0.24 -0.9 682,987 - PGA1_c06660 0.28 +0.4 683,024 + PGA1_c06660 0.30 +0.1 683,032 - PGA1_c06660 0.30 -0.3 683,086 - PGA1_c06660 0.33 -0.9 683,086 - PGA1_c06660 0.33 +1.0 683,197 + PGA1_c06660 0.39 -0.3 683,199 - PGA1_c06660 0.39 -1.0 683,199 - PGA1_c06660 0.39 -0.6 683,260 + PGA1_c06660 0.42 +0.1 683,410 + PGA1_c06660 0.50 +1.1
Or see this region's nucleotide sequence