Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c26120

Experiment: marine broth 25C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine broth 25C
2,715,770	+		PGA1_c26100	0.69	+0.2
2,715,800	+		PGA1_c26100	0.72	+0.5
2,715,822	-		PGA1_c26100	0.74	-1.2
2,715,824	+		PGA1_c26100	0.74	+1.3
2,715,824	+		PGA1_c26100	0.74	+0.9
2,715,824	+		PGA1_c26100	0.74	+1.2
2,715,824	+		PGA1_c26100	0.74	-0.3
2,715,832	-		PGA1_c26100	0.75	+0.2
2,715,832	-		PGA1_c26100	0.75	-2.7
2,715,832	-		PGA1_c26100	0.75	-1.9
2,715,832	-		PGA1_c26100	0.75	-0.7
2,715,851	-		PGA1_c26100	0.77	+0.3
2,715,876	+		PGA1_c26100	0.80	+0.9
2,715,879	-		PGA1_c26100	0.80	+0.5
2,715,881	+		PGA1_c26100	0.80	-0.1
2,715,893	+		PGA1_c26100	0.81	-1.7
2,715,893	+		PGA1_c26100	0.81	+0.5
2,715,901	-		PGA1_c26100	0.82	+0.3
2,715,901	-		PGA1_c26100	0.82	-0.5
2,715,923	-		PGA1_c26100	0.84	-0.3
2,715,928	+		PGA1_c26100	0.85	-0.0
2,716,034	-				-0.7
2,716,034	-				+1.5
2,716,066	+				-0.8
2,716,097	+				-0.1
2,716,159	-				-0.5
2,716,212	-				-0.0
2,716,222	+				+0.1
2,716,225	-				+0.8
2,716,299	+				-0.6
2,716,386	+		PGA1_c26110	0.29	+0.6
2,716,386	+		PGA1_c26110	0.29	-0.1
2,716,386	+		PGA1_c26110	0.29	-0.2
2,716,386	+		PGA1_c26110	0.29	+0.5
2,716,394	-		PGA1_c26110	0.31	+1.5
2,716,394	-		PGA1_c26110	0.31	-0.7
2,716,394	-		PGA1_c26110	0.31	+0.8
2,716,394	-		PGA1_c26110	0.31	-0.2
2,716,396	+		PGA1_c26110	0.32	-0.9
2,716,396	+		PGA1_c26110	0.32	+0.2
2,716,396	+		PGA1_c26110	0.32	+0.4
2,716,396	+		PGA1_c26110	0.32	-0.3
2,716,396	+		PGA1_c26110	0.32	-0.1
2,716,396	+		PGA1_c26110	0.32	-0.3
2,716,396	+		PGA1_c26110	0.32	-0.2
2,716,396	+		PGA1_c26110	0.32	-0.2
2,716,396	+		PGA1_c26110	0.32	-0.2
2,716,396	+		PGA1_c26110	0.32	+0.1
2,716,396	+		PGA1_c26110	0.32	-0.2
2,716,396	+		PGA1_c26110	0.32	-0.9
2,716,396	+		PGA1_c26110	0.32	-0.5
2,716,396	+		PGA1_c26110	0.32	-1.9
2,716,396	+		PGA1_c26110	0.32	-1.7
2,716,396	+		PGA1_c26110	0.32	+0.0
2,716,396	+		PGA1_c26110	0.32	+0.4
2,716,396	+		PGA1_c26110	0.32	-1.1
2,716,396	+		PGA1_c26110	0.32	-0.7
2,716,396	+		PGA1_c26110	0.32	-1.4
2,716,396	+		PGA1_c26110	0.32	-0.9
2,716,396	+		PGA1_c26110	0.32	-0.7
2,716,396	+		PGA1_c26110	0.32	-0.4
2,716,396	-		PGA1_c26110	0.32	+0.9
2,716,404	-		PGA1_c26110	0.35	-0.4
2,716,404	-		PGA1_c26110	0.35	+0.7
2,716,404	-		PGA1_c26110	0.35	+0.3
2,716,404	-		PGA1_c26110	0.35	-0.1
2,716,419	+		PGA1_c26110	0.39	-0.3
2,716,460	+		PGA1_c26110	0.52	-0.7
2,716,467	-		PGA1_c26110	0.54	-0.7
2,716,532	+		PGA1_c26110	0.74	-0.4
2,716,540	-		PGA1_c26110	0.77	+0.5
2,716,540	-		PGA1_c26110	0.77	-0.5
2,716,540	-		PGA1_c26110	0.77	+1.0
2,716,545	-		PGA1_c26110	0.78	+0.7
2,716,587	+				+0.6
2,716,595	-				-0.0
2,716,595	-				-1.7
2,716,622	+				-0.0
2,716,630	+				-0.8
2,716,661	+				+0.8
2,716,669	-				-0.2
2,716,747	+				-0.4
2,716,800	+				+0.0
2,716,813	-				+1.3
2,716,869	+				-0.1
2,716,893	+				-0.2
2,716,893	+				+1.3
2,716,901	-				-0.1
2,716,958	+		PGA1_c26120	0.13	-0.9
2,717,001	-		PGA1_c26120	0.15	-0.6
2,717,001	-		PGA1_c26120	0.15	-1.1
2,717,026	-		PGA1_c26120	0.17	-1.8
2,717,188	-		PGA1_c26120	0.28	-1.1
2,717,246	-		PGA1_c26120	0.31	+0.3
2,717,260	+		PGA1_c26120	0.32	+1.2
2,717,260	+		PGA1_c26120	0.32	+1.2
2,717,268	-		PGA1_c26120	0.33	+2.0
2,717,268	-		PGA1_c26120	0.33	+0.3
2,717,283	+		PGA1_c26120	0.34	+0.5
2,717,288	+		PGA1_c26120	0.34	+0.0
2,717,323	-		PGA1_c26120	0.36	-1.5
2,717,341	-		PGA1_c26120	0.38	+1.2
2,717,362	+		PGA1_c26120	0.39	-1.2
2,717,370	-		PGA1_c26120	0.39	-1.7
2,717,434	-		PGA1_c26120	0.44	-0.6
2,717,438	-		PGA1_c26120	0.44	+0.2
2,717,486	-		PGA1_c26120	0.47	+0.7
2,717,486	-		PGA1_c26120	0.47	-1.0
2,717,486	-		PGA1_c26120	0.47	-1.4
2,717,493	+		PGA1_c26120	0.47	-1.3
2,717,515	+		PGA1_c26120	0.49	-0.6
2,717,557	-		PGA1_c26120	0.52	-1.4
2,717,557	-		PGA1_c26120	0.52	+0.6
2,717,646	-		PGA1_c26120	0.57	-1.3
2,717,660	+		PGA1_c26120	0.58	+0.9
2,717,663	-		PGA1_c26120	0.58	-0.7
2,717,747	-		PGA1_c26120	0.64	+0.6
2,717,855	+		PGA1_c26120	0.71	+1.1
2,717,866	+		PGA1_c26120	0.72	-0.5
2,717,875	+		PGA1_c26120	0.72	-1.9
2,717,883	-		PGA1_c26120	0.73	+0.1
2,717,902	-		PGA1_c26120	0.74	-1.4
2,717,909	+		PGA1_c26120	0.74	-0.5
2,717,932	-		PGA1_c26120	0.76	+0.5
2,717,972	-		PGA1_c26120	0.78	+0.0
2,718,005	-		PGA1_c26120	0.81	+0.9
2,718,175	+				+0.3
2,718,175	+				-0.5
2,718,215	+				+0.5
2,718,251	+				-0.4
2,718,264	-				-0.3
2,718,309	+				-0.5
2,718,380	+				+1.2
2,718,388	-				-0.7
2,718,412	+				+0.5
2,718,420	-				+0.7
2,718,540	-				+1.2
2,718,540	-				+0.3
2,718,627	+		PGA1_c26130	0.26	-1.9
2,718,637	+		PGA1_c26130	0.29	-1.2
2,718,637	+		PGA1_c26130	0.29	+0.0
2,718,645	-		PGA1_c26130	0.31	+0.3
2,718,645	-		PGA1_c26130	0.31	-0.2
2,718,672	+		PGA1_c26130	0.38	-0.7
2,718,695	+		PGA1_c26130	0.43	-0.2
2,718,695	+		PGA1_c26130	0.43	-0.2
2,718,700	+		PGA1_c26130	0.45	+0.5
2,718,708	-		PGA1_c26130	0.47	+0.2
2,718,708	-		PGA1_c26130	0.47	-1.2
2,718,728	+		PGA1_c26130	0.52	+0.2
2,718,736	-		PGA1_c26130	0.54	-1.4
2,718,762	+		PGA1_c26130	0.60	+0.1
2,718,781	+		PGA1_c26130	0.65	+0.1
2,718,811	+		PGA1_c26130	0.72	+1.5
2,718,814	-		PGA1_c26130	0.73	-1.6
2,718,819	-		PGA1_c26130	0.74	-0.4
2,718,860	-		PGA1_c26130	0.85	-1.9
2,718,921	+				-0.8
2,718,924	-				-0.9
2,718,947	+				+1.3
2,718,951	-				+0.0
2,719,010	-				-0.8
2,719,033	+				+0.5
2,719,041	-				-0.2
2,719,043	+				-0.9
2,719,044	+				-0.1
2,719,044	+				-0.9
2,719,052	-				+0.0
2,719,052	-				+1.0
2,719,052	-				-2.1
2,719,052	-				-2.2
2,719,052	-				-0.1
2,719,052	-				-2.9
2,719,052	-				+1.3
2,719,052	-				+0.6
2,719,052	-				+0.3
2,719,077	+				-0.5
2,719,085	-				+0.2
2,719,129	-				+1.8
2,719,153	-				+0.2
2,719,153	-				+0.3
2,719,187	+				-0.4
2,719,237	-				+0.1
2,719,302	-				-0.4