Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c12980

Experiment: marine broth 25C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine broth 25C
1,342,096	+		PGA1_c12960	0.86	+1.6
1,342,166	+				-2.6
1,342,166	+				-0.3
1,342,174	-				+0.2
1,342,174	-				+0.4
1,342,177	+				+1.9
1,342,192	-				-0.3
1,342,209	-				-1.7
1,342,234	+				+0.1
1,342,234	+				+1.7
1,342,234	+				-0.1
1,342,274	-				-0.1
1,342,274	-				+1.6
1,342,274	-				+1.0
1,342,310	-				+0.3
1,342,326	-				-1.1
1,342,326	-				-2.0
1,342,340	-				+0.2
1,342,390	-		PGA1_c12970	0.10	+0.3
1,342,419	+		PGA1_c12970	0.15	-1.7
1,342,491	+		PGA1_c12970	0.26	-0.5
1,342,500	+		PGA1_c12970	0.27	-1.5
1,342,514	+		PGA1_c12970	0.29	-0.4
1,342,518	-		PGA1_c12970	0.30	+1.2
1,342,519	+		PGA1_c12970	0.30	-0.9
1,342,643	+		PGA1_c12970	0.49	-0.1
1,342,646	-		PGA1_c12970	0.50	+0.4
1,342,646	-		PGA1_c12970	0.50	+0.4
1,342,659	-		PGA1_c12970	0.52	+0.5
1,342,675	+		PGA1_c12970	0.54	+2.2
1,342,675	+		PGA1_c12970	0.54	-1.0
1,342,675	+		PGA1_c12970	0.54	-0.0
1,342,675	+		PGA1_c12970	0.54	-0.7
1,342,675	+		PGA1_c12970	0.54	-0.9
1,342,675	+		PGA1_c12970	0.54	-0.2
1,342,675	+		PGA1_c12970	0.54	-0.8
1,342,675	+		PGA1_c12970	0.54	+0.1
1,342,675	+		PGA1_c12970	0.54	-0.1
1,342,675	+		PGA1_c12970	0.54	-1.5
1,342,675	+		PGA1_c12970	0.54	-1.0
1,342,675	+		PGA1_c12970	0.54	+0.0
1,342,675	+		PGA1_c12970	0.54	-0.5
1,342,675	+		PGA1_c12970	0.54	-0.3
1,342,683	-		PGA1_c12970	0.55	+0.5
1,342,683	-		PGA1_c12970	0.55	+0.6
1,342,683	-		PGA1_c12970	0.55	+1.6
1,342,683	-		PGA1_c12970	0.55	-2.5
1,342,683	-		PGA1_c12970	0.55	-1.1
1,342,683	-		PGA1_c12970	0.55	-0.8
1,342,683	-		PGA1_c12970	0.55	-0.6
1,342,694	+		PGA1_c12970	0.57	-1.4
1,342,715	-		PGA1_c12970	0.60	-0.5
1,342,727	+		PGA1_c12970	0.62	-0.7
1,342,727	+		PGA1_c12970	0.62	+0.2
1,342,733	+		PGA1_c12970	0.63	+0.9
1,342,839	-		PGA1_c12970	0.79	+1.4
1,342,864	-		PGA1_c12970	0.83	-0.2
1,342,902	+		PGA1_c12970	0.89	-1.0
1,342,931	+				-0.1
1,342,933	+				-1.1
1,342,951	-				-0.6
1,343,036	-				-0.1
1,343,155	+		PGA1_c12980	0.12	+0.7
1,343,191	-		PGA1_c12980	0.15	-0.0
1,343,210	+		PGA1_c12980	0.16	-1.9
1,343,210	+		PGA1_c12980	0.16	-1.0
1,343,222	+		PGA1_c12980	0.17	-0.4
1,343,257	+		PGA1_c12980	0.19	-1.6
1,343,270	-		PGA1_c12980	0.20	+0.5
1,343,272	-		PGA1_c12980	0.21	+0.9
1,343,282	-		PGA1_c12980	0.21	-0.0
1,343,342	+		PGA1_c12980	0.26	+0.1
1,343,408	-		PGA1_c12980	0.30	-0.6
1,343,533	-		PGA1_c12980	0.39	-0.1
1,343,589	+		PGA1_c12980	0.43	-1.7
1,343,589	+		PGA1_c12980	0.43	+0.9
1,343,589	+		PGA1_c12980	0.43	-0.7
1,343,589	+		PGA1_c12980	0.43	-0.2
1,343,597	-		PGA1_c12980	0.44	-1.6
1,343,633	+		PGA1_c12980	0.46	-0.3
1,343,652	-		PGA1_c12980	0.48	+0.5
1,343,742	+		PGA1_c12980	0.54	-0.6
1,343,744	-		PGA1_c12980	0.54	-0.0
1,343,757	+		PGA1_c12980	0.55	-0.1
1,343,770	-		PGA1_c12980	0.56	+0.4
1,343,780	-		PGA1_c12980	0.57	+0.4
1,343,859	+		PGA1_c12980	0.62	-0.9
1,343,898	+		PGA1_c12980	0.65	+1.0
1,343,898	+		PGA1_c12980	0.65	+0.2
1,343,898	+		PGA1_c12980	0.65	+0.8
1,343,898	+		PGA1_c12980	0.65	+0.7
1,343,906	-		PGA1_c12980	0.66	+0.0
1,343,906	-		PGA1_c12980	0.66	+0.1
1,343,906	-		PGA1_c12980	0.66	-1.3
1,343,906	-		PGA1_c12980	0.66	+1.6
1,343,906	-		PGA1_c12980	0.66	-2.2
1,343,916	-		PGA1_c12980	0.67	+0.3
1,344,013	+		PGA1_c12980	0.73	-1.2
1,344,020	+		PGA1_c12980	0.74	-1.1
1,344,140	+		PGA1_c12980	0.83	-0.6
1,344,140	+		PGA1_c12980	0.83	-1.7
1,344,140	+		PGA1_c12980	0.83	-0.5
1,344,140	+		PGA1_c12980	0.83	+0.9
1,344,140	+		PGA1_c12980	0.83	-0.5
1,344,140	+		PGA1_c12980	0.83	-0.1
1,344,140	+		PGA1_c12980	0.83	-1.4
1,344,141	-		PGA1_c12980	0.83	-2.1
1,344,148	-		PGA1_c12980	0.83	+0.9
1,344,148	-		PGA1_c12980	0.83	-1.1
1,344,150	+		PGA1_c12980	0.83	+0.3
1,344,153	-		PGA1_c12980	0.83	+1.5
1,344,154	+		PGA1_c12980	0.84	-0.3
1,344,237	-		PGA1_c12980	0.89	+1.0
1,344,237	-		PGA1_c12980	0.89	-0.4
1,344,237	-		PGA1_c12980	0.89	-1.8
1,344,309	-				-0.1
1,344,311	-				-0.4
1,344,361	-				+1.2
1,344,378	+				+0.9
1,344,378	+				-2.8
1,344,434	+				+0.5
1,344,442	-				+0.4
1,344,442	-				+0.4
1,344,489	+				-1.3
1,344,558	-		PGA1_c12990	0.11	-0.8
1,344,607	+		PGA1_c12990	0.21	-0.7
1,344,614	+		PGA1_c12990	0.22	+0.1
1,344,615	-		PGA1_c12990	0.23	+1.0
1,344,615	-		PGA1_c12990	0.23	-1.7
1,344,644	+		PGA1_c12990	0.29	+0.6
1,344,662	-		PGA1_c12990	0.32	-0.7
1,344,662	-		PGA1_c12990	0.32	+0.9
1,344,799	+		PGA1_c12990	0.61	-0.3
1,344,799	+		PGA1_c12990	0.61	-0.6
1,344,807	-		PGA1_c12990	0.63	+0.9
1,344,830	+		PGA1_c12990	0.68	+0.6
1,344,889	+		PGA1_c12990	0.80	+0.3
1,344,889	+		PGA1_c12990	0.80	-0.7
1,344,889	+		PGA1_c12990	0.80	-0.1
1,344,897	-		PGA1_c12990	0.82	-1.3
1,344,897	-		PGA1_c12990	0.82	-0.3
1,344,897	-		PGA1_c12990	0.82	-1.1
1,344,909	+		PGA1_c12990	0.85	-2.0
1,344,909	+		PGA1_c12990	0.85	-0.2
1,344,917	-		PGA1_c12990	0.86	+2.4
1,344,954	-				-0.5
1,344,959	-				+0.7
1,344,976	+				+0.1
1,344,978	-				-0.1
1,344,983	-				-1.5
1,344,984	-				-0.2
1,345,025	-				-0.7
1,345,041	+				+0.9
1,345,051	+				-0.3
1,345,054	+				-1.2
1,345,127	+				+0.1
1,345,155	+				+0.2
1,345,213	-		PGA1_c13000	0.12	+3.2
1,345,213	-		PGA1_c13000	0.12	-0.9
1,345,250	-		PGA1_c13000	0.22	-1.7
1,345,250	-		PGA1_c13000	0.22	-0.3
1,345,250	-		PGA1_c13000	0.22	-0.7
1,345,253	+		PGA1_c13000	0.23	+0.3
1,345,253	+		PGA1_c13000	0.23	-0.4
1,345,253	+		PGA1_c13000	0.23	+3.4
1,345,253	+		PGA1_c13000	0.23	-1.7
1,345,253	+		PGA1_c13000	0.23	+1.0
1,345,261	-		PGA1_c13000	0.25	+0.4
1,345,261	-		PGA1_c13000	0.25	+0.8
1,345,332	+		PGA1_c13000	0.44	+0.4
1,345,341	+		PGA1_c13000	0.47	+0.4
1,345,375	+		PGA1_c13000	0.56	-0.6