Experiment: LB in EcoFAB_10mL EcoFab with sand
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27615 and BWI76_RS27620 are separated by 185 nucleotides BWI76_RS27620 and BWI76_RS27625 are separated by 112 nucleotides BWI76_RS27625 and BWI76_RS27630 are separated by 1 nucleotides BWI76_RS27630 and BWI76_RS27635 overlap by 4 nucleotides
BWI76_RS27615: BWI76_RS27615 - putative Shikimate kinase, at 5,731,743 to 5,732,348
_RS27615
BWI76_RS27620: BWI76_RS27620 - hypothetical protein, at 5,732,534 to 5,733,001
_RS27620
BWI76_RS27625: BWI76_RS27625 - NADPH:quinone reductase, at 5,733,114 to 5,734,121
_RS27625
BWI76_RS27630: BWI76_RS27630 - antibiotic biosynthesis monooxygenase, at 5,734,123 to 5,734,461
_RS27630
BWI76_RS27635: BWI76_RS27635 - AraC family transcriptional regulator, at 5,734,458 to 5,735,411
_RS27635
Position (kb) 5733
5734
5735 Strain fitness (log2 ratio) -2
-1
0
1 at 5732.153 kb on + strand, within BWI76_RS27615 at 5732.178 kb on - strand, within BWI76_RS27615 at 5732.280 kb on - strand, within BWI76_RS27615 at 5732.294 kb on + strand at 5732.348 kb on + strand at 5732.356 kb on - strand at 5732.356 kb on - strand at 5732.356 kb on - strand at 5732.356 kb on - strand at 5732.374 kb on + strand at 5732.432 kb on + strand at 5732.440 kb on - strand at 5732.460 kb on - strand at 5732.492 kb on - strand at 5732.568 kb on + strand at 5732.576 kb on - strand at 5732.576 kb on - strand at 5732.587 kb on + strand, within BWI76_RS27620 at 5732.624 kb on - strand, within BWI76_RS27620 at 5732.631 kb on + strand, within BWI76_RS27620 at 5732.639 kb on - strand, within BWI76_RS27620 at 5732.639 kb on - strand, within BWI76_RS27620 at 5732.925 kb on - strand, within BWI76_RS27620 at 5732.956 kb on - strand at 5733.066 kb on + strand at 5733.069 kb on - strand at 5733.070 kb on - strand at 5733.112 kb on + strand at 5733.389 kb on + strand, within BWI76_RS27625 at 5733.469 kb on - strand, within BWI76_RS27625 at 5733.532 kb on + strand, within BWI76_RS27625 at 5733.830 kb on + strand, within BWI76_RS27625 at 5733.870 kb on - strand, within BWI76_RS27625 at 5733.905 kb on - strand, within BWI76_RS27625 at 5733.924 kb on + strand, within BWI76_RS27625 at 5734.115 kb on + strand at 5734.123 kb on - strand at 5734.160 kb on + strand, within BWI76_RS27630 at 5734.163 kb on - strand, within BWI76_RS27630 at 5734.163 kb on - strand, within BWI76_RS27630 at 5734.163 kb on - strand, within BWI76_RS27630 at 5734.307 kb on + strand, within BWI76_RS27630 at 5734.436 kb on + strand at 5734.477 kb on + strand at 5734.498 kb on - strand at 5734.533 kb on + strand at 5734.567 kb on - strand, within BWI76_RS27635 at 5734.585 kb on + strand, within BWI76_RS27635 at 5735.074 kb on - strand, within BWI76_RS27635 at 5735.090 kb on + strand, within BWI76_RS27635
Per-strain Table
Position Strand Gene LocusTag Fraction LB in EcoFAB_10mL EcoFab with sand remove 5,732,153 + BWI76_RS27615 0.68 -0.6 5,732,178 - BWI76_RS27615 0.72 +0.1 5,732,280 - BWI76_RS27615 0.89 -0.1 5,732,294 + -0.7 5,732,348 + -0.0 5,732,356 - +1.0 5,732,356 - -0.8 5,732,356 - -0.3 5,732,356 - +1.2 5,732,374 + -0.1 5,732,432 + -0.5 5,732,440 - +0.8 5,732,460 - +0.2 5,732,492 - +0.4 5,732,568 + -0.5 5,732,576 - -0.1 5,732,576 - +0.1 5,732,587 + BWI76_RS27620 0.11 -1.6 5,732,624 - BWI76_RS27620 0.19 +0.6 5,732,631 + BWI76_RS27620 0.21 -1.2 5,732,639 - BWI76_RS27620 0.22 -0.9 5,732,639 - BWI76_RS27620 0.22 -0.7 5,732,925 - BWI76_RS27620 0.84 +1.2 5,732,956 - +0.1 5,733,066 + +0.1 5,733,069 - -1.1 5,733,070 - +0.1 5,733,112 + -0.4 5,733,389 + BWI76_RS27625 0.27 -1.4 5,733,469 - BWI76_RS27625 0.35 -0.3 5,733,532 + BWI76_RS27625 0.41 +0.0 5,733,830 + BWI76_RS27625 0.71 -0.3 5,733,870 - BWI76_RS27625 0.75 -2.1 5,733,905 - BWI76_RS27625 0.78 -1.7 5,733,924 + BWI76_RS27625 0.80 -1.1 5,734,115 + -0.2 5,734,123 - +0.9 5,734,160 + BWI76_RS27630 0.11 +0.4 5,734,163 - BWI76_RS27630 0.12 -0.1 5,734,163 - BWI76_RS27630 0.12 +0.9 5,734,163 - BWI76_RS27630 0.12 -0.5 5,734,307 + BWI76_RS27630 0.54 +1.2 5,734,436 + +0.3 5,734,477 + +0.5 5,734,498 - +0.4 5,734,533 + +0.1 5,734,567 - BWI76_RS27635 0.11 +0.5 5,734,585 + BWI76_RS27635 0.13 -0.1 5,735,074 - BWI76_RS27635 0.65 -1.6 5,735,090 + BWI76_RS27635 0.66 -0.2
Or see this region's nucleotide sequence