Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS19640

Experiment: diet=StandardDiet2; sample=FecalPellet; mouse16; day2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=StandardDiet2; sample=FecalPellet; mouse16; day2
2,188,315	-				+0.4
2,188,338	-				+0.5
2,188,338	-				+1.1
2,188,367	+				+0.9
2,188,368	-				-2.4
2,188,368	-				-0.5
2,188,368	-				+0.4
2,188,375	-				-0.4
2,188,375	-				+1.5
2,188,385	-				-0.6
2,188,385	-				-2.9
2,188,385	-				+2.9
2,188,391	-				-1.8
2,188,391	-				+0.6
2,188,400	+				-1.2
2,188,408	-				+0.7
2,188,408	-				-1.0
2,188,408	-				-1.1
2,188,408	-				-1.6
2,188,410	+				-0.1
2,188,417	+		BBR_RS19635	0.10	+0.5
2,188,419	+		BBR_RS19635	0.10	-0.6
2,188,431	-		BBR_RS19635	0.12	-1.0
2,188,495	+		BBR_RS19635	0.20	+1.3
2,188,495	+		BBR_RS19635	0.20	-0.1
2,188,499	+		BBR_RS19635	0.20	+0.7
2,188,502	-		BBR_RS19635	0.21	-0.6
2,188,521	+		BBR_RS19635	0.23	+1.1
2,188,526	+		BBR_RS19635	0.24	+0.3
2,188,534	-		BBR_RS19635	0.25	+0.2
2,188,556	+		BBR_RS19635	0.27	-0.3
2,188,571	-		BBR_RS19635	0.29	+1.5
2,188,571	-		BBR_RS19635	0.29	+1.0
2,188,578	+		BBR_RS19635	0.30	-0.2
2,188,578	+		BBR_RS19635	0.30	-1.4
2,188,583	-		BBR_RS19635	0.31	-1.9
2,188,586	-		BBR_RS19635	0.31	-1.5
2,188,586	-		BBR_RS19635	0.31	-3.2
2,188,663	+		BBR_RS19635	0.41	+1.0
2,188,682	+		BBR_RS19635	0.43	-0.4
2,188,682	+		BBR_RS19635	0.43	-1.4
2,188,690	-		BBR_RS19635	0.44	-0.2
2,188,692	+		BBR_RS19635	0.44	+0.2
2,188,740	-		BBR_RS19635	0.50	-0.2
2,188,740	-		BBR_RS19635	0.50	-1.6
2,188,784	-		BBR_RS19635	0.56	-0.5
2,188,792	+		BBR_RS19635	0.57	+0.2
2,188,794	-		BBR_RS19635	0.57	-1.6
2,188,794	-		BBR_RS19635	0.57	-0.7
2,188,796	+		BBR_RS19635	0.57	-0.1
2,188,800	-		BBR_RS19635	0.58	+0.6
2,188,800	-		BBR_RS19635	0.58	-0.7
2,188,821	-		BBR_RS19635	0.60	-0.3
2,188,821	-		BBR_RS19635	0.60	-2.4
2,188,855	-		BBR_RS19635	0.64	-0.3
2,188,860	-		BBR_RS19635	0.65	-2.7
2,188,862	-		BBR_RS19635	0.65	-1.5
2,188,876	+		BBR_RS19635	0.67	-2.4
2,188,884	-		BBR_RS19635	0.68	+1.9
2,188,886	-		BBR_RS19635	0.68	-2.2
2,188,891	-		BBR_RS19635	0.69	-0.6
2,188,891	-		BBR_RS19635	0.69	-1.8
2,188,891	-		BBR_RS19635	0.69	+0.7
2,188,925	+		BBR_RS19635	0.73	+0.4
2,188,932	+		BBR_RS19635	0.74	+0.3
2,188,932	+		BBR_RS19635	0.74	+0.1
2,188,935	-		BBR_RS19635	0.74	+0.9
2,188,942	+		BBR_RS19635	0.75	-0.5
2,188,942	+		BBR_RS19635	0.75	+0.2
2,188,944	-		BBR_RS19635	0.75	-1.2
2,188,950	-		BBR_RS19635	0.76	+1.0
2,188,975	-		BBR_RS19635	0.79	-0.6
2,188,975	-		BBR_RS19635	0.79	+0.0
2,189,014	+		BBR_RS19635	0.84	+0.4
2,189,014	+		BBR_RS19635	0.84	+1.5
2,189,022	-		BBR_RS19635	0.85	+1.1
2,189,022	-		BBR_RS19635	0.85	-0.1
2,189,022	-		BBR_RS19635	0.85	-1.7
2,189,039	+		BBR_RS19635	0.87	+0.3
2,189,050	+		BBR_RS19635	0.88	+1.3
2,189,066	-				+0.5
2,189,074	+				-1.9
2,189,082	-				-0.1
2,189,082	-				+0.0
2,189,097	-				-0.2
2,189,097	-				-0.5
2,189,107	+				+1.7
2,189,115	-				-0.4
2,189,120	+				-1.2
2,189,120	+				-2.1
2,189,125	+				-0.1
2,189,125	+				-0.5
2,189,125	+				+0.1
2,189,128	-				-1.0
2,189,128	-				-2.2
2,189,133	-				-1.1
2,189,133	-				-1.8
2,189,133	-				-2.0
2,189,161	-				+0.4
2,189,166	-				-1.3
2,189,167	+				-1.4
2,189,175	-				-0.5
2,189,191	+				+0.4
2,189,191	+				-0.4
2,189,191	+				+0.5
2,189,199	-				+0.3
2,189,204	-				+0.2
2,189,209	-				-1.1
2,189,214	+				-1.6
2,189,214	+				+1.2
2,189,214	+				+0.5
2,189,214	+				+1.9
2,189,214	+				+1.3
2,189,222	-				-0.4
2,189,222	-				+0.4
2,189,231	-				-1.2
2,189,244	-				+1.0
2,189,247	-				+0.1
2,189,253	-				+0.5
2,189,264	+				-1.4
2,189,279	+				-1.5
2,189,322	-				-0.2
2,189,343	-				+0.4
2,189,343	-				-0.3
2,189,345	+				-1.0
2,189,360	+				-1.8
2,189,376	-				+0.6
2,189,376	-				-0.2
2,189,376	-				-0.8
2,189,376	-				-1.1
2,190,201	+		BBR_RS19640	0.69	-1.6
2,190,579	-				-0.8
2,190,606	+				-2.8
2,190,621	+				+1.3
2,190,621	+				+0.2
2,190,621	+				+0.5
2,190,623	+				+1.5
2,190,626	+				+0.7
2,190,626	+				-0.3
2,190,629	-				-0.1
2,190,631	-				+1.6
2,190,634	-				-0.8
2,190,683	-				-0.8
2,190,688	-				+0.6
2,190,692	-				+0.8
2,190,699	+				+0.1
2,190,706	+				+1.5
2,190,707	-				-0.3
2,190,721	+				+0.9
2,190,745	+				+1.8
2,190,747	+				-0.1
2,190,755	+				+1.3
2,190,755	+				+1.4
2,190,757	+				-0.6
2,190,757	-				+0.6
2,190,772	-				+0.3
2,190,783	-				-0.2
2,190,790	-				+0.6
2,190,790	-				-2.3
2,190,792	+				+1.8
2,190,792	+				-0.1
2,190,792	+				-0.7
2,190,795	-				+0.2
2,190,795	-				+1.6
2,190,800	-				-0.9
2,190,810	+				-1.9
2,190,826	-				+0.5
2,190,860	+				-1.2
2,190,873	-				-0.2
2,190,941	+		BBR_RS21120	0.16	-0.8
2,190,948	+		BBR_RS21120	0.18	-0.4
2,190,948	+		BBR_RS21120	0.18	-0.5
2,190,956	-		BBR_RS21120	0.20	-1.0
2,190,968	+		BBR_RS21120	0.24	+0.1
2,190,968	+		BBR_RS21120	0.24	+0.1
2,190,979	+		BBR_RS21120	0.27	+1.7
2,191,007	-		BBR_RS21120	0.36	+1.6
2,191,007	-		BBR_RS21120	0.36	-0.6
2,191,013	+		BBR_RS21120	0.38	-0.7
2,191,044	+		BBR_RS21120	0.48	-0.5
2,191,062	+		BBR_RS21120	0.53	-2.3
2,191,062	+		BBR_RS21120	0.53	-2.4
2,191,068	-		BBR_RS21120	0.55	+1.5
2,191,080	-		BBR_RS21120	0.59	+0.1
2,191,109	+		BBR_RS21120	0.68	+2.0
2,191,109	+		BBR_RS21120	0.68	+1.8
2,191,118	-		BBR_RS21120	0.71	+1.0
2,191,129	+		BBR_RS21120	0.74	+0.6
2,191,129	+		BBR_RS21120	0.74	-2.5
2,191,129	+		BBR_RS21120	0.74	+3.0
2,191,129	+		BBR_RS21120	0.74	+0.5
2,191,129	+		BBR_RS21120	0.74	-0.5
2,191,129	+		BBR_RS21120	0.74	+0.0
2,191,129	+		BBR_RS21120	0.74	-0.3
2,191,129	+		BBR_RS21120	0.74	-1.1
2,191,129	+		BBR_RS21120	0.74	+0.3
2,191,129	+		BBR_RS21120	0.74	+1.0
2,191,137	-		BBR_RS21120	0.77	-0.4
2,191,137	-		BBR_RS21120	0.77	-0.3
2,191,137	-		BBR_RS21120	0.77	-0.2
2,191,137	-		BBR_RS21120	0.77	-2.0
2,191,137	-		BBR_RS21120	0.77	-1.2
2,191,137	-		BBR_RS21120	0.77	+0.6
2,191,137	-		BBR_RS21120	0.77	+1.5
2,191,137	-		BBR_RS21120	0.77	+0.9
2,191,137	-		BBR_RS21120	0.77	+1.1
2,191,137	-		BBR_RS21120	0.77	-1.2
2,191,137	-		BBR_RS21120	0.77	-0.4
2,191,137	-		BBR_RS21120	0.77	-1.1
2,191,137	-		BBR_RS21120	0.77	-0.7
2,191,137	-		BBR_RS21120	0.77	-1.1
2,191,137	-		BBR_RS21120	0.77	-2.5
2,191,137	-		BBR_RS21120	0.77	-2.0
2,191,137	-		BBR_RS21120	0.77	-2.1
2,191,151	-		BBR_RS21120	0.81	-2.8
2,191,175	+				-2.5
2,191,175	+				-0.5
2,191,175	+				-1.6
2,191,175	+				-2.6
2,191,175	+				-2.0
2,191,175	+				-1.1
2,191,180	+				+0.2
2,191,185	+				-1.2
2,191,208	+				-1.9
2,191,217	-				+0.3
2,191,268	+				+0.8
2,191,431	+		BBR_RS19645	0.12	-0.9
2,191,441	+		BBR_RS19645	0.13	-2.0
2,191,452	+		BBR_RS19645	0.13	-0.0
2,191,456	+		BBR_RS19645	0.14	+1.9
2,191,510	+		BBR_RS19645	0.16	-1.3
2,191,571	-		BBR_RS19645	0.19	+0.1