Experiment: diet=StandardDiet2; sample=FecalPellet; mouse16; day2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS10985 and BBR_RS10990 are separated by 44 nucleotides BBR_RS10990 and BBR_RS10995 are separated by 120 nucleotides BBR_RS10995 and BBR_RS20570 overlap by 31 nucleotides BBR_RS20570 and BBR_RS11000 are separated by 0 nucleotides
BBR_RS10985: BBR_RS10985 - DNA polymerase III subunit gamma and tau, at 204,111 to 206,843
_RS10985
BBR_RS10990: BBR_RS10990 - recombination protein RecR, at 206,888 to 207,490
_RS10990
BBR_RS10995: BBR_RS10995 - ATP-binding protein, at 207,611 to 207,934
_RS10995
BBR_RS20570: BBR_RS20570 - hypothetical protein, at 207,904 to 208,176
_RS20570
BBR_RS11000: BBR_RS11000 - class C sortase, at 208,177 to 209,400
_RS11000
Position (kb) 206
207
208 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 206.769 kb on + strand at 206.810 kb on + strand at 206.810 kb on + strand at 206.844 kb on + strand at 206.844 kb on + strand at 206.845 kb on - strand at 206.845 kb on - strand at 206.847 kb on - strand at 206.850 kb on - strand at 206.850 kb on - strand at 206.874 kb on + strand at 206.874 kb on + strand at 206.885 kb on - strand at 206.891 kb on + strand at 206.897 kb on + strand at 206.904 kb on - strand at 206.905 kb on - strand at 206.905 kb on - strand at 206.910 kb on - strand at 206.910 kb on - strand at 206.923 kb on + strand at 206.923 kb on + strand at 206.930 kb on - strand at 206.931 kb on + strand at 206.952 kb on - strand, within BBR_RS10990 at 206.966 kb on + strand, within BBR_RS10990 at 206.979 kb on - strand, within BBR_RS10990 at 207.005 kb on + strand, within BBR_RS10990 at 207.030 kb on - strand, within BBR_RS10990 at 207.048 kb on - strand, within BBR_RS10990 at 207.108 kb on + strand, within BBR_RS10990 at 207.111 kb on - strand, within BBR_RS10990 at 207.116 kb on - strand, within BBR_RS10990 at 207.116 kb on - strand, within BBR_RS10990 at 207.161 kb on + strand, within BBR_RS10990 at 207.162 kb on - strand, within BBR_RS10990 at 207.162 kb on - strand, within BBR_RS10990 at 207.162 kb on - strand, within BBR_RS10990 at 207.162 kb on - strand, within BBR_RS10990 at 207.169 kb on - strand, within BBR_RS10990 at 207.173 kb on + strand, within BBR_RS10990 at 207.183 kb on + strand, within BBR_RS10990 at 207.192 kb on + strand, within BBR_RS10990 at 207.193 kb on - strand, within BBR_RS10990 at 207.198 kb on + strand, within BBR_RS10990 at 207.199 kb on + strand, within BBR_RS10990 at 207.202 kb on + strand, within BBR_RS10990 at 207.206 kb on - strand, within BBR_RS10990 at 207.211 kb on + strand, within BBR_RS10990 at 207.240 kb on + strand, within BBR_RS10990 at 207.248 kb on - strand, within BBR_RS10990 at 207.248 kb on - strand, within BBR_RS10990 at 207.272 kb on - strand, within BBR_RS10990 at 207.272 kb on - strand, within BBR_RS10990 at 207.272 kb on - strand, within BBR_RS10990 at 207.272 kb on - strand, within BBR_RS10990 at 207.274 kb on + strand, within BBR_RS10990 at 207.274 kb on + strand, within BBR_RS10990 at 207.274 kb on + strand, within BBR_RS10990 at 207.274 kb on + strand, within BBR_RS10990 at 207.282 kb on - strand, within BBR_RS10990 at 207.306 kb on - strand, within BBR_RS10990 at 207.317 kb on + strand, within BBR_RS10990 at 207.352 kb on - strand, within BBR_RS10990 at 207.399 kb on - strand, within BBR_RS10990 at 207.447 kb on + strand at 207.485 kb on + strand at 207.486 kb on - strand at 207.498 kb on - strand at 207.504 kb on + strand at 207.510 kb on - strand at 207.510 kb on - strand at 207.510 kb on - strand at 207.510 kb on - strand at 207.512 kb on - strand at 207.569 kb on + strand at 207.572 kb on + strand at 207.574 kb on + strand at 207.577 kb on - strand at 207.580 kb on - strand at 207.595 kb on - strand at 207.595 kb on - strand at 207.595 kb on - strand at 207.641 kb on - strand at 207.642 kb on + strand at 207.642 kb on + strand at 207.642 kb on + strand at 207.650 kb on - strand, within BBR_RS10995 at 207.650 kb on - strand, within BBR_RS10995 at 207.650 kb on - strand, within BBR_RS10995 at 207.659 kb on + strand, within BBR_RS10995 at 207.694 kb on - strand, within BBR_RS10995 at 207.694 kb on - strand, within BBR_RS10995 at 207.698 kb on + strand, within BBR_RS10995 at 207.706 kb on - strand, within BBR_RS10995 at 207.706 kb on - strand, within BBR_RS10995 at 207.706 kb on - strand, within BBR_RS10995 at 207.708 kb on + strand, within BBR_RS10995 at 207.788 kb on + strand, within BBR_RS10995 at 207.803 kb on + strand, within BBR_RS10995 at 207.808 kb on - strand, within BBR_RS10995 at 207.810 kb on + strand, within BBR_RS10995 at 207.810 kb on + strand, within BBR_RS10995 at 207.811 kb on - strand, within BBR_RS10995 at 207.813 kb on - strand, within BBR_RS10995 at 207.818 kb on - strand, within BBR_RS10995 at 207.818 kb on - strand, within BBR_RS10995 at 207.818 kb on - strand, within BBR_RS10995 at 207.848 kb on + strand, within BBR_RS10995 at 207.882 kb on - strand, within BBR_RS10995 at 207.916 kb on - strand at 207.916 kb on - strand at 207.923 kb on + strand at 207.958 kb on + strand, within BBR_RS20570 at 207.958 kb on - strand, within BBR_RS20570 at 207.960 kb on + strand, within BBR_RS20570 at 207.960 kb on + strand, within BBR_RS20570 at 207.975 kb on + strand, within BBR_RS20570 at 207.983 kb on - strand, within BBR_RS20570 at 207.992 kb on + strand, within BBR_RS20570 at 208.002 kb on + strand, within BBR_RS20570 at 208.018 kb on - strand, within BBR_RS20570 at 208.036 kb on + strand, within BBR_RS20570 at 208.036 kb on + strand, within BBR_RS20570 at 208.056 kb on + strand, within BBR_RS20570 at 208.064 kb on + strand, within BBR_RS20570 at 208.064 kb on - strand, within BBR_RS20570 at 208.073 kb on - strand, within BBR_RS20570 at 208.107 kb on - strand, within BBR_RS20570 at 208.122 kb on - strand, within BBR_RS20570 at 208.133 kb on + strand, within BBR_RS20570 at 208.135 kb on + strand, within BBR_RS20570 at 208.153 kb on + strand at 208.205 kb on - strand at 208.213 kb on - strand at 208.225 kb on - strand at 208.230 kb on + strand at 208.230 kb on + strand at 208.234 kb on + strand at 208.234 kb on + strand at 208.244 kb on - strand at 208.281 kb on - strand at 208.292 kb on + strand at 208.292 kb on + strand at 208.302 kb on + strand, within BBR_RS11000 at 208.315 kb on - strand, within BBR_RS11000 at 208.315 kb on - strand, within BBR_RS11000 at 208.315 kb on - strand, within BBR_RS11000 at 208.315 kb on - strand, within BBR_RS11000 at 208.315 kb on - strand, within BBR_RS11000 at 208.331 kb on + strand, within BBR_RS11000 at 208.331 kb on + strand, within BBR_RS11000 at 208.331 kb on + strand, within BBR_RS11000 at 208.331 kb on + strand, within BBR_RS11000 at 208.339 kb on - strand, within BBR_RS11000 at 208.339 kb on - strand, within BBR_RS11000 at 208.341 kb on + strand, within BBR_RS11000 at 208.348 kb on - strand, within BBR_RS11000 at 208.360 kb on - strand, within BBR_RS11000 at 208.372 kb on + strand, within BBR_RS11000 at 208.380 kb on + strand, within BBR_RS11000 at 208.390 kb on + strand, within BBR_RS11000 at 208.398 kb on - strand, within BBR_RS11000 at 208.406 kb on - strand, within BBR_RS11000 at 208.407 kb on + strand, within BBR_RS11000 at 208.407 kb on + strand, within BBR_RS11000 at 208.407 kb on + strand, within BBR_RS11000 at 208.407 kb on + strand, within BBR_RS11000 at 208.407 kb on + strand, within BBR_RS11000 at 208.407 kb on + strand, within BBR_RS11000 at 208.407 kb on + strand, within BBR_RS11000 at 208.407 kb on + strand, within BBR_RS11000 at 208.407 kb on + strand, within BBR_RS11000 at 208.415 kb on - strand, within BBR_RS11000 at 208.415 kb on - strand, within BBR_RS11000 at 208.415 kb on - strand, within BBR_RS11000 at 208.415 kb on - strand, within BBR_RS11000 at 208.415 kb on - strand, within BBR_RS11000 at 208.418 kb on + strand, within BBR_RS11000 at 208.464 kb on + strand, within BBR_RS11000 at 208.465 kb on - strand, within BBR_RS11000 at 208.472 kb on + strand, within BBR_RS11000 at 208.472 kb on + strand, within BBR_RS11000 at 208.472 kb on + strand, within BBR_RS11000 at 208.476 kb on + strand, within BBR_RS11000 at 208.479 kb on + strand, within BBR_RS11000 at 208.479 kb on + strand, within BBR_RS11000 at 208.479 kb on + strand, within BBR_RS11000 at 208.479 kb on + strand, within BBR_RS11000 at 208.479 kb on + strand, within BBR_RS11000 at 208.479 kb on + strand, within BBR_RS11000 at 208.479 kb on + strand, within BBR_RS11000 at 208.479 kb on + strand, within BBR_RS11000 at 208.479 kb on + strand, within BBR_RS11000 at 208.479 kb on + strand, within BBR_RS11000 at 208.479 kb on + strand, within BBR_RS11000 at 208.479 kb on + strand, within BBR_RS11000 at 208.481 kb on + strand, within BBR_RS11000 at 208.484 kb on + strand, within BBR_RS11000 at 208.487 kb on - strand, within BBR_RS11000 at 208.487 kb on - strand, within BBR_RS11000 at 208.487 kb on - strand, within BBR_RS11000 at 208.487 kb on - strand, within BBR_RS11000 at 208.487 kb on - strand, within BBR_RS11000 at 208.487 kb on - strand, within BBR_RS11000 at 208.487 kb on - strand, within BBR_RS11000 at 208.487 kb on - strand, within BBR_RS11000 at 208.487 kb on - strand, within BBR_RS11000 at 208.487 kb on - strand, within BBR_RS11000 at 208.487 kb on - strand, within BBR_RS11000 at 208.489 kb on - strand, within BBR_RS11000
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet2; sample=FecalPellet; mouse16; day2 remove 206,769 + -2.1 206,810 + +1.8 206,810 + +0.6 206,844 + +0.5 206,844 + -1.7 206,845 - +0.2 206,845 - +0.2 206,847 - -1.1 206,850 - +1.2 206,850 - -0.6 206,874 + +0.3 206,874 + -0.4 206,885 - -1.4 206,891 + -2.0 206,897 + -1.0 206,904 - -2.9 206,905 - -1.4 206,905 - +0.4 206,910 - -1.8 206,910 - -2.3 206,923 + -1.4 206,923 + -1.1 206,930 - -0.1 206,931 + -0.4 206,952 - BBR_RS10990 0.11 +0.5 206,966 + BBR_RS10990 0.13 -0.5 206,979 - BBR_RS10990 0.15 -1.9 207,005 + BBR_RS10990 0.19 -0.0 207,030 - BBR_RS10990 0.24 -1.2 207,048 - BBR_RS10990 0.27 -2.0 207,108 + BBR_RS10990 0.36 -1.1 207,111 - BBR_RS10990 0.37 -1.9 207,116 - BBR_RS10990 0.38 -0.8 207,116 - BBR_RS10990 0.38 +1.1 207,161 + BBR_RS10990 0.45 -1.4 207,162 - BBR_RS10990 0.45 -1.4 207,162 - BBR_RS10990 0.45 -1.1 207,162 - BBR_RS10990 0.45 -1.2 207,162 - BBR_RS10990 0.45 -1.0 207,169 - BBR_RS10990 0.47 -2.1 207,173 + BBR_RS10990 0.47 -1.4 207,183 + BBR_RS10990 0.49 -1.0 207,192 + BBR_RS10990 0.50 +1.3 207,193 - BBR_RS10990 0.51 -0.3 207,198 + BBR_RS10990 0.51 -0.4 207,199 + BBR_RS10990 0.52 -1.0 207,202 + BBR_RS10990 0.52 -1.1 207,206 - BBR_RS10990 0.53 +0.2 207,211 + BBR_RS10990 0.54 -2.8 207,240 + BBR_RS10990 0.58 -3.6 207,248 - BBR_RS10990 0.60 -1.5 207,248 - BBR_RS10990 0.60 -1.2 207,272 - BBR_RS10990 0.64 -2.6 207,272 - BBR_RS10990 0.64 -1.2 207,272 - BBR_RS10990 0.64 -0.5 207,272 - BBR_RS10990 0.64 -0.8 207,274 + BBR_RS10990 0.64 -0.1 207,274 + BBR_RS10990 0.64 -2.2 207,274 + BBR_RS10990 0.64 +0.2 207,274 + BBR_RS10990 0.64 +2.1 207,282 - BBR_RS10990 0.65 +0.1 207,306 - BBR_RS10990 0.69 -2.4 207,317 + BBR_RS10990 0.71 -0.8 207,352 - BBR_RS10990 0.77 -1.5 207,399 - BBR_RS10990 0.85 -0.4 207,447 + -0.8 207,485 + +0.9 207,486 - -0.5 207,498 - +0.5 207,504 + +0.7 207,510 - -1.3 207,510 - +0.4 207,510 - -0.1 207,510 - -0.5 207,512 - +0.9 207,569 + -0.5 207,572 + -0.3 207,574 + +0.1 207,577 - -1.9 207,580 - +0.1 207,595 - +1.6 207,595 - +2.0 207,595 - -0.1 207,641 - -0.3 207,642 + -0.3 207,642 + +0.7 207,642 + +1.0 207,650 - BBR_RS10995 0.12 -0.0 207,650 - BBR_RS10995 0.12 -0.5 207,650 - BBR_RS10995 0.12 +1.1 207,659 + BBR_RS10995 0.15 +1.6 207,694 - BBR_RS10995 0.26 +1.4 207,694 - BBR_RS10995 0.26 -1.0 207,698 + BBR_RS10995 0.27 -0.9 207,706 - BBR_RS10995 0.29 +0.1 207,706 - BBR_RS10995 0.29 +0.6 207,706 - BBR_RS10995 0.29 -0.6 207,708 + BBR_RS10995 0.30 -0.1 207,788 + BBR_RS10995 0.55 -1.3 207,803 + BBR_RS10995 0.59 +1.2 207,808 - BBR_RS10995 0.61 +0.7 207,810 + BBR_RS10995 0.61 +0.9 207,810 + BBR_RS10995 0.61 -1.7 207,811 - BBR_RS10995 0.62 -0.6 207,813 - BBR_RS10995 0.62 -0.1 207,818 - BBR_RS10995 0.64 +0.7 207,818 - BBR_RS10995 0.64 +0.6 207,818 - BBR_RS10995 0.64 +0.2 207,848 + BBR_RS10995 0.73 +1.4 207,882 - BBR_RS10995 0.84 +0.2 207,916 - +0.7 207,916 - +0.5 207,923 + +0.2 207,958 + BBR_RS20570 0.20 -0.1 207,958 - BBR_RS20570 0.20 -2.3 207,960 + BBR_RS20570 0.21 +0.9 207,960 + BBR_RS20570 0.21 +0.8 207,975 + BBR_RS20570 0.26 -2.1 207,983 - BBR_RS20570 0.29 +0.3 207,992 + BBR_RS20570 0.32 -1.5 208,002 + BBR_RS20570 0.36 -0.1 208,018 - BBR_RS20570 0.42 +0.6 208,036 + BBR_RS20570 0.48 +0.7 208,036 + BBR_RS20570 0.48 -2.2 208,056 + BBR_RS20570 0.56 -0.3 208,064 + BBR_RS20570 0.59 +0.2 208,064 - BBR_RS20570 0.59 +0.5 208,073 - BBR_RS20570 0.62 +1.1 208,107 - BBR_RS20570 0.74 +1.0 208,122 - BBR_RS20570 0.80 +1.6 208,133 + BBR_RS20570 0.84 -0.0 208,135 + BBR_RS20570 0.85 +0.5 208,153 + -0.5 208,205 - -1.3 208,213 - +1.7 208,225 - +0.9 208,230 + +0.3 208,230 + -1.6 208,234 + +1.4 208,234 + -0.2 208,244 - +1.8 208,281 - -0.4 208,292 + -2.1 208,292 + -0.6 208,302 + BBR_RS11000 0.10 +1.6 208,315 - BBR_RS11000 0.11 -1.2 208,315 - BBR_RS11000 0.11 +0.9 208,315 - BBR_RS11000 0.11 +0.2 208,315 - BBR_RS11000 0.11 -0.6 208,315 - BBR_RS11000 0.11 +1.3 208,331 + BBR_RS11000 0.13 +0.9 208,331 + BBR_RS11000 0.13 +0.8 208,331 + BBR_RS11000 0.13 -0.8 208,331 + BBR_RS11000 0.13 +1.1 208,339 - BBR_RS11000 0.13 +0.8 208,339 - BBR_RS11000 0.13 +0.2 208,341 + BBR_RS11000 0.13 +1.1 208,348 - BBR_RS11000 0.14 +1.3 208,360 - BBR_RS11000 0.15 +1.1 208,372 + BBR_RS11000 0.16 +0.3 208,380 + BBR_RS11000 0.17 +2.0 208,390 + BBR_RS11000 0.17 +1.3 208,398 - BBR_RS11000 0.18 +0.7 208,406 - BBR_RS11000 0.19 -0.3 208,407 + BBR_RS11000 0.19 +1.9 208,407 + BBR_RS11000 0.19 -0.2 208,407 + BBR_RS11000 0.19 -0.7 208,407 + BBR_RS11000 0.19 +2.1 208,407 + BBR_RS11000 0.19 +0.1 208,407 + BBR_RS11000 0.19 +1.6 208,407 + BBR_RS11000 0.19 +1.3 208,407 + BBR_RS11000 0.19 +1.4 208,407 + BBR_RS11000 0.19 +0.5 208,415 - BBR_RS11000 0.19 +1.8 208,415 - BBR_RS11000 0.19 +1.8 208,415 - BBR_RS11000 0.19 +1.0 208,415 - BBR_RS11000 0.19 +0.2 208,415 - BBR_RS11000 0.19 +0.6 208,418 + BBR_RS11000 0.20 +1.3 208,464 + BBR_RS11000 0.23 +0.9 208,465 - BBR_RS11000 0.24 +0.0 208,472 + BBR_RS11000 0.24 +1.9 208,472 + BBR_RS11000 0.24 +2.6 208,472 + BBR_RS11000 0.24 +1.4 208,476 + BBR_RS11000 0.24 -0.1 208,479 + BBR_RS11000 0.25 +0.5 208,479 + BBR_RS11000 0.25 +0.5 208,479 + BBR_RS11000 0.25 -1.8 208,479 + BBR_RS11000 0.25 +0.2 208,479 + BBR_RS11000 0.25 +0.3 208,479 + BBR_RS11000 0.25 -0.5 208,479 + BBR_RS11000 0.25 +0.8 208,479 + BBR_RS11000 0.25 +0.3 208,479 + BBR_RS11000 0.25 -0.2 208,479 + BBR_RS11000 0.25 +0.7 208,479 + BBR_RS11000 0.25 +0.7 208,479 + BBR_RS11000 0.25 +0.6 208,481 + BBR_RS11000 0.25 +0.4 208,484 + BBR_RS11000 0.25 +1.2 208,487 - BBR_RS11000 0.25 -1.3 208,487 - BBR_RS11000 0.25 +1.9 208,487 - BBR_RS11000 0.25 -1.0 208,487 - BBR_RS11000 0.25 +1.4 208,487 - BBR_RS11000 0.25 +1.0 208,487 - BBR_RS11000 0.25 +2.5 208,487 - BBR_RS11000 0.25 -1.2 208,487 - BBR_RS11000 0.25 +1.1 208,487 - BBR_RS11000 0.25 -1.3 208,487 - BBR_RS11000 0.25 -0.8 208,487 - BBR_RS11000 0.25 +0.3 208,489 - BBR_RS11000 0.25 +0.1
Or see this region's nucleotide sequence