Experiment: diet=StandardDiet2; sample=FecalPellet; mouse16; day2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS10975 and BBR_RS10980 are separated by 78 nucleotides BBR_RS10980 and BBR_RS10985 are separated by 221 nucleotides BBR_RS10985 and BBR_RS10990 are separated by 44 nucleotides BBR_RS10990 and BBR_RS10995 are separated by 120 nucleotides
BBR_RS10975: BBR_RS10975 - diacylglycerol kinase, at 202,081 to 203,211
_RS10975
BBR_RS10980: BBR_RS10980 - TetR/AcrR family transcriptional regulator, at 203,290 to 203,889
_RS10980
BBR_RS10985: BBR_RS10985 - DNA polymerase III subunit gamma and tau, at 204,111 to 206,843
_RS10985
BBR_RS10990: BBR_RS10990 - recombination protein RecR, at 206,888 to 207,490
_RS10990
BBR_RS10995: BBR_RS10995 - ATP-binding protein, at 207,611 to 207,934
_RS10995
Position (kb) 204
205
206
207 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 203.113 kb on - strand at 203.126 kb on - strand at 203.129 kb on + strand at 203.131 kb on + strand at 203.149 kb on - strand at 203.149 kb on - strand at 203.149 kb on - strand at 203.149 kb on - strand at 203.151 kb on + strand at 203.164 kb on + strand at 203.172 kb on - strand at 203.189 kb on - strand at 203.238 kb on + strand at 203.238 kb on + strand at 203.250 kb on + strand at 203.264 kb on + strand at 203.266 kb on + strand at 203.266 kb on + strand at 203.274 kb on - strand at 203.279 kb on - strand at 203.303 kb on + strand at 203.303 kb on + strand at 203.303 kb on - strand at 203.305 kb on - strand at 203.310 kb on - strand at 203.311 kb on + strand at 203.322 kb on + strand at 203.330 kb on + strand at 203.334 kb on + strand at 203.351 kb on - strand, within BBR_RS10980 at 203.354 kb on + strand, within BBR_RS10980 at 203.355 kb on - strand, within BBR_RS10980 at 203.356 kb on + strand, within BBR_RS10980 at 203.369 kb on - strand, within BBR_RS10980 at 203.376 kb on + strand, within BBR_RS10980 at 203.380 kb on + strand, within BBR_RS10980 at 203.380 kb on + strand, within BBR_RS10980 at 203.380 kb on + strand, within BBR_RS10980 at 203.380 kb on + strand, within BBR_RS10980 at 203.380 kb on + strand, within BBR_RS10980 at 203.385 kb on + strand, within BBR_RS10980 at 203.385 kb on + strand, within BBR_RS10980 at 203.385 kb on + strand, within BBR_RS10980 at 203.385 kb on + strand, within BBR_RS10980 at 203.385 kb on + strand, within BBR_RS10980 at 203.385 kb on + strand, within BBR_RS10980 at 203.387 kb on + strand, within BBR_RS10980 at 203.388 kb on - strand, within BBR_RS10980 at 203.388 kb on - strand, within BBR_RS10980 at 203.388 kb on - strand, within BBR_RS10980 at 203.388 kb on - strand, within BBR_RS10980 at 203.388 kb on - strand, within BBR_RS10980 at 203.393 kb on - strand, within BBR_RS10980 at 203.395 kb on - strand, within BBR_RS10980 at 203.420 kb on - strand, within BBR_RS10980 at 203.423 kb on + strand, within BBR_RS10980 at 203.435 kb on + strand, within BBR_RS10980 at 203.442 kb on - strand, within BBR_RS10980 at 203.443 kb on - strand, within BBR_RS10980 at 203.445 kb on + strand, within BBR_RS10980 at 203.445 kb on + strand, within BBR_RS10980 at 203.460 kb on + strand, within BBR_RS10980 at 203.460 kb on + strand, within BBR_RS10980 at 203.460 kb on - strand, within BBR_RS10980 at 203.462 kb on + strand, within BBR_RS10980 at 203.464 kb on + strand, within BBR_RS10980 at 203.464 kb on + strand, within BBR_RS10980 at 203.464 kb on + strand, within BBR_RS10980 at 203.464 kb on + strand, within BBR_RS10980 at 203.468 kb on - strand, within BBR_RS10980 at 203.469 kb on + strand, within BBR_RS10980 at 203.472 kb on - strand, within BBR_RS10980 at 203.472 kb on - strand, within BBR_RS10980 at 203.477 kb on - strand, within BBR_RS10980 at 203.477 kb on - strand, within BBR_RS10980 at 203.479 kb on - strand, within BBR_RS10980 at 203.481 kb on - strand, within BBR_RS10980 at 203.515 kb on + strand, within BBR_RS10980 at 203.526 kb on - strand, within BBR_RS10980 at 203.529 kb on - strand, within BBR_RS10980 at 203.529 kb on - strand, within BBR_RS10980 at 203.578 kb on + strand, within BBR_RS10980 at 203.585 kb on + strand, within BBR_RS10980 at 203.585 kb on + strand, within BBR_RS10980 at 203.587 kb on + strand, within BBR_RS10980 at 203.589 kb on + strand, within BBR_RS10980 at 203.598 kb on - strand, within BBR_RS10980 at 203.620 kb on - strand, within BBR_RS10980 at 203.640 kb on + strand, within BBR_RS10980 at 203.662 kb on + strand, within BBR_RS10980 at 203.665 kb on - strand, within BBR_RS10980 at 203.665 kb on - strand, within BBR_RS10980 at 203.696 kb on + strand, within BBR_RS10980 at 203.696 kb on + strand, within BBR_RS10980 at 203.704 kb on - strand, within BBR_RS10980 at 203.829 kb on + strand, within BBR_RS10980 at 203.829 kb on + strand, within BBR_RS10980 at 203.829 kb on + strand, within BBR_RS10980 at 203.837 kb on - strand at 203.837 kb on - strand at 203.838 kb on + strand at 203.848 kb on - strand at 203.864 kb on + strand at 203.897 kb on + strand at 203.909 kb on - strand at 203.913 kb on + strand at 203.923 kb on + strand at 203.931 kb on - strand at 203.979 kb on + strand at 203.979 kb on + strand at 203.987 kb on + strand at 204.004 kb on - strand at 204.025 kb on + strand at 204.025 kb on + strand at 204.025 kb on + strand at 204.025 kb on + strand at 204.025 kb on + strand at 204.033 kb on - strand at 204.033 kb on - strand at 204.035 kb on + strand at 204.044 kb on + strand at 204.044 kb on + strand at 204.044 kb on + strand at 204.045 kb on + strand at 204.045 kb on + strand at 204.045 kb on + strand at 204.045 kb on + strand at 204.059 kb on - strand at 204.090 kb on + strand at 204.090 kb on + strand at 204.090 kb on + strand at 204.090 kb on + strand at 204.090 kb on + strand at 204.098 kb on - strand at 204.100 kb on + strand at 204.101 kb on + strand at 206.769 kb on + strand at 206.810 kb on + strand at 206.810 kb on + strand at 206.844 kb on + strand at 206.844 kb on + strand at 206.845 kb on - strand at 206.845 kb on - strand at 206.847 kb on - strand at 206.850 kb on - strand at 206.850 kb on - strand at 206.874 kb on + strand at 206.874 kb on + strand at 206.885 kb on - strand at 206.891 kb on + strand at 206.897 kb on + strand at 206.904 kb on - strand at 206.905 kb on - strand at 206.905 kb on - strand at 206.910 kb on - strand at 206.910 kb on - strand at 206.923 kb on + strand at 206.923 kb on + strand at 206.930 kb on - strand at 206.931 kb on + strand at 206.952 kb on - strand, within BBR_RS10990 at 206.966 kb on + strand, within BBR_RS10990 at 206.979 kb on - strand, within BBR_RS10990 at 207.005 kb on + strand, within BBR_RS10990 at 207.030 kb on - strand, within BBR_RS10990 at 207.048 kb on - strand, within BBR_RS10990 at 207.108 kb on + strand, within BBR_RS10990 at 207.111 kb on - strand, within BBR_RS10990 at 207.116 kb on - strand, within BBR_RS10990 at 207.116 kb on - strand, within BBR_RS10990 at 207.161 kb on + strand, within BBR_RS10990 at 207.162 kb on - strand, within BBR_RS10990 at 207.162 kb on - strand, within BBR_RS10990 at 207.162 kb on - strand, within BBR_RS10990 at 207.162 kb on - strand, within BBR_RS10990 at 207.169 kb on - strand, within BBR_RS10990 at 207.173 kb on + strand, within BBR_RS10990 at 207.183 kb on + strand, within BBR_RS10990 at 207.192 kb on + strand, within BBR_RS10990 at 207.193 kb on - strand, within BBR_RS10990 at 207.198 kb on + strand, within BBR_RS10990 at 207.199 kb on + strand, within BBR_RS10990 at 207.202 kb on + strand, within BBR_RS10990 at 207.206 kb on - strand, within BBR_RS10990 at 207.211 kb on + strand, within BBR_RS10990 at 207.240 kb on + strand, within BBR_RS10990 at 207.248 kb on - strand, within BBR_RS10990 at 207.248 kb on - strand, within BBR_RS10990 at 207.272 kb on - strand, within BBR_RS10990 at 207.272 kb on - strand, within BBR_RS10990 at 207.272 kb on - strand, within BBR_RS10990 at 207.272 kb on - strand, within BBR_RS10990 at 207.274 kb on + strand, within BBR_RS10990 at 207.274 kb on + strand, within BBR_RS10990 at 207.274 kb on + strand, within BBR_RS10990 at 207.274 kb on + strand, within BBR_RS10990 at 207.282 kb on - strand, within BBR_RS10990 at 207.306 kb on - strand, within BBR_RS10990 at 207.317 kb on + strand, within BBR_RS10990 at 207.352 kb on - strand, within BBR_RS10990 at 207.399 kb on - strand, within BBR_RS10990 at 207.447 kb on + strand at 207.485 kb on + strand at 207.486 kb on - strand at 207.498 kb on - strand at 207.504 kb on + strand at 207.510 kb on - strand at 207.510 kb on - strand at 207.510 kb on - strand at 207.510 kb on - strand at 207.512 kb on - strand at 207.569 kb on + strand at 207.572 kb on + strand at 207.574 kb on + strand at 207.577 kb on - strand at 207.580 kb on - strand at 207.595 kb on - strand at 207.595 kb on - strand at 207.595 kb on - strand at 207.641 kb on - strand at 207.642 kb on + strand at 207.642 kb on + strand at 207.642 kb on + strand at 207.650 kb on - strand, within BBR_RS10995 at 207.650 kb on - strand, within BBR_RS10995 at 207.650 kb on - strand, within BBR_RS10995 at 207.659 kb on + strand, within BBR_RS10995 at 207.694 kb on - strand, within BBR_RS10995 at 207.694 kb on - strand, within BBR_RS10995 at 207.698 kb on + strand, within BBR_RS10995 at 207.706 kb on - strand, within BBR_RS10995 at 207.706 kb on - strand, within BBR_RS10995 at 207.706 kb on - strand, within BBR_RS10995 at 207.708 kb on + strand, within BBR_RS10995 at 207.788 kb on + strand, within BBR_RS10995 at 207.803 kb on + strand, within BBR_RS10995 at 207.808 kb on - strand, within BBR_RS10995 at 207.810 kb on + strand, within BBR_RS10995 at 207.810 kb on + strand, within BBR_RS10995 at 207.811 kb on - strand, within BBR_RS10995 at 207.813 kb on - strand, within BBR_RS10995 at 207.818 kb on - strand, within BBR_RS10995 at 207.818 kb on - strand, within BBR_RS10995 at 207.818 kb on - strand, within BBR_RS10995
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet2; sample=FecalPellet; mouse16; day2 remove 203,113 - +0.6 203,126 - -2.8 203,129 + +1.0 203,131 + +0.5 203,149 - -1.3 203,149 - +1.6 203,149 - -0.3 203,149 - +1.6 203,151 + +0.7 203,164 + -1.2 203,172 - -0.1 203,189 - -1.9 203,238 + -0.0 203,238 + -1.3 203,250 + +1.7 203,264 + +0.0 203,266 + +1.4 203,266 + -3.3 203,274 - +0.3 203,279 - +0.3 203,303 + -2.1 203,303 + +0.4 203,303 - -0.4 203,305 - -2.8 203,310 - +0.2 203,311 + -3.4 203,322 + -4.0 203,330 + -1.8 203,334 + -2.7 203,351 - BBR_RS10980 0.10 -2.0 203,354 + BBR_RS10980 0.11 -3.2 203,355 - BBR_RS10980 0.11 -3.6 203,356 + BBR_RS10980 0.11 -3.6 203,369 - BBR_RS10980 0.13 -1.9 203,376 + BBR_RS10980 0.14 -1.4 203,380 + BBR_RS10980 0.15 -2.5 203,380 + BBR_RS10980 0.15 -2.9 203,380 + BBR_RS10980 0.15 -1.0 203,380 + BBR_RS10980 0.15 -1.1 203,380 + BBR_RS10980 0.15 -4.2 203,385 + BBR_RS10980 0.16 +0.4 203,385 + BBR_RS10980 0.16 -2.0 203,385 + BBR_RS10980 0.16 -1.9 203,385 + BBR_RS10980 0.16 -2.0 203,385 + BBR_RS10980 0.16 -3.3 203,385 + BBR_RS10980 0.16 -2.0 203,387 + BBR_RS10980 0.16 -3.3 203,388 - BBR_RS10980 0.16 -2.6 203,388 - BBR_RS10980 0.16 -0.1 203,388 - BBR_RS10980 0.16 -1.2 203,388 - BBR_RS10980 0.16 -2.4 203,388 - BBR_RS10980 0.16 -3.5 203,393 - BBR_RS10980 0.17 -2.1 203,395 - BBR_RS10980 0.17 -2.5 203,420 - BBR_RS10980 0.22 -1.4 203,423 + BBR_RS10980 0.22 -3.1 203,435 + BBR_RS10980 0.24 -2.1 203,442 - BBR_RS10980 0.25 -1.7 203,443 - BBR_RS10980 0.26 -1.1 203,445 + BBR_RS10980 0.26 -0.5 203,445 + BBR_RS10980 0.26 -3.5 203,460 + BBR_RS10980 0.28 -2.3 203,460 + BBR_RS10980 0.28 -1.7 203,460 - BBR_RS10980 0.28 -2.3 203,462 + BBR_RS10980 0.29 -2.5 203,464 + BBR_RS10980 0.29 -1.5 203,464 + BBR_RS10980 0.29 -2.3 203,464 + BBR_RS10980 0.29 -0.7 203,464 + BBR_RS10980 0.29 -2.5 203,468 - BBR_RS10980 0.30 -0.9 203,469 + BBR_RS10980 0.30 -4.5 203,472 - BBR_RS10980 0.30 -1.3 203,472 - BBR_RS10980 0.30 -3.1 203,477 - BBR_RS10980 0.31 -0.7 203,477 - BBR_RS10980 0.31 -2.3 203,479 - BBR_RS10980 0.32 +0.7 203,481 - BBR_RS10980 0.32 -0.7 203,515 + BBR_RS10980 0.38 -2.5 203,526 - BBR_RS10980 0.39 -1.7 203,529 - BBR_RS10980 0.40 -2.0 203,529 - BBR_RS10980 0.40 -2.2 203,578 + BBR_RS10980 0.48 -1.5 203,585 + BBR_RS10980 0.49 -2.5 203,585 + BBR_RS10980 0.49 -2.4 203,587 + BBR_RS10980 0.49 -0.9 203,589 + BBR_RS10980 0.50 -2.0 203,598 - BBR_RS10980 0.51 -1.8 203,620 - BBR_RS10980 0.55 +0.3 203,640 + BBR_RS10980 0.58 -2.4 203,662 + BBR_RS10980 0.62 -2.9 203,665 - BBR_RS10980 0.62 -3.7 203,665 - BBR_RS10980 0.62 -1.9 203,696 + BBR_RS10980 0.68 -1.5 203,696 + BBR_RS10980 0.68 -4.0 203,704 - BBR_RS10980 0.69 -2.2 203,829 + BBR_RS10980 0.90 -3.1 203,829 + BBR_RS10980 0.90 -2.5 203,829 + BBR_RS10980 0.90 -3.3 203,837 - -3.3 203,837 - -3.2 203,838 + -3.3 203,848 - -2.3 203,864 + -4.9 203,897 + +0.4 203,909 - +0.9 203,913 + -0.4 203,923 + +0.8 203,931 - -0.8 203,979 + +1.4 203,979 + +1.0 203,987 + -1.9 204,004 - +1.2 204,025 + -0.6 204,025 + +1.4 204,025 + +0.9 204,025 + -1.3 204,025 + -0.9 204,033 - +0.4 204,033 - -1.4 204,035 + +1.2 204,044 + +0.8 204,044 + -0.7 204,044 + +1.2 204,045 + -0.6 204,045 + +1.4 204,045 + -0.4 204,045 + -0.1 204,059 - -0.7 204,090 + -0.6 204,090 + -2.3 204,090 + -0.8 204,090 + -0.6 204,090 + -2.3 204,098 - -0.5 204,100 + -0.8 204,101 + +0.2 206,769 + -2.1 206,810 + +1.8 206,810 + +0.6 206,844 + +0.5 206,844 + -1.7 206,845 - +0.2 206,845 - +0.2 206,847 - -1.1 206,850 - +1.2 206,850 - -0.6 206,874 + +0.3 206,874 + -0.4 206,885 - -1.4 206,891 + -2.0 206,897 + -1.0 206,904 - -2.9 206,905 - -1.4 206,905 - +0.4 206,910 - -1.8 206,910 - -2.3 206,923 + -1.4 206,923 + -1.1 206,930 - -0.1 206,931 + -0.4 206,952 - BBR_RS10990 0.11 +0.5 206,966 + BBR_RS10990 0.13 -0.5 206,979 - BBR_RS10990 0.15 -1.9 207,005 + BBR_RS10990 0.19 -0.0 207,030 - BBR_RS10990 0.24 -1.2 207,048 - BBR_RS10990 0.27 -2.0 207,108 + BBR_RS10990 0.36 -1.1 207,111 - BBR_RS10990 0.37 -1.9 207,116 - BBR_RS10990 0.38 -0.8 207,116 - BBR_RS10990 0.38 +1.1 207,161 + BBR_RS10990 0.45 -1.4 207,162 - BBR_RS10990 0.45 -1.4 207,162 - BBR_RS10990 0.45 -1.1 207,162 - BBR_RS10990 0.45 -1.2 207,162 - BBR_RS10990 0.45 -1.0 207,169 - BBR_RS10990 0.47 -2.1 207,173 + BBR_RS10990 0.47 -1.4 207,183 + BBR_RS10990 0.49 -1.0 207,192 + BBR_RS10990 0.50 +1.3 207,193 - BBR_RS10990 0.51 -0.3 207,198 + BBR_RS10990 0.51 -0.4 207,199 + BBR_RS10990 0.52 -1.0 207,202 + BBR_RS10990 0.52 -1.1 207,206 - BBR_RS10990 0.53 +0.2 207,211 + BBR_RS10990 0.54 -2.8 207,240 + BBR_RS10990 0.58 -3.6 207,248 - BBR_RS10990 0.60 -1.5 207,248 - BBR_RS10990 0.60 -1.2 207,272 - BBR_RS10990 0.64 -2.6 207,272 - BBR_RS10990 0.64 -1.2 207,272 - BBR_RS10990 0.64 -0.5 207,272 - BBR_RS10990 0.64 -0.8 207,274 + BBR_RS10990 0.64 -0.1 207,274 + BBR_RS10990 0.64 -2.2 207,274 + BBR_RS10990 0.64 +0.2 207,274 + BBR_RS10990 0.64 +2.1 207,282 - BBR_RS10990 0.65 +0.1 207,306 - BBR_RS10990 0.69 -2.4 207,317 + BBR_RS10990 0.71 -0.8 207,352 - BBR_RS10990 0.77 -1.5 207,399 - BBR_RS10990 0.85 -0.4 207,447 + -0.8 207,485 + +0.9 207,486 - -0.5 207,498 - +0.5 207,504 + +0.7 207,510 - -1.3 207,510 - +0.4 207,510 - -0.1 207,510 - -0.5 207,512 - +0.9 207,569 + -0.5 207,572 + -0.3 207,574 + +0.1 207,577 - -1.9 207,580 - +0.1 207,595 - +1.6 207,595 - +2.0 207,595 - -0.1 207,641 - -0.3 207,642 + -0.3 207,642 + +0.7 207,642 + +1.0 207,650 - BBR_RS10995 0.12 -0.0 207,650 - BBR_RS10995 0.12 -0.5 207,650 - BBR_RS10995 0.12 +1.1 207,659 + BBR_RS10995 0.15 +1.6 207,694 - BBR_RS10995 0.26 +1.4 207,694 - BBR_RS10995 0.26 -1.0 207,698 + BBR_RS10995 0.27 -0.9 207,706 - BBR_RS10995 0.29 +0.1 207,706 - BBR_RS10995 0.29 +0.6 207,706 - BBR_RS10995 0.29 -0.6 207,708 + BBR_RS10995 0.30 -0.1 207,788 + BBR_RS10995 0.55 -1.3 207,803 + BBR_RS10995 0.59 +1.2 207,808 - BBR_RS10995 0.61 +0.7 207,810 + BBR_RS10995 0.61 +0.9 207,810 + BBR_RS10995 0.61 -1.7 207,811 - BBR_RS10995 0.62 -0.6 207,813 - BBR_RS10995 0.62 -0.1 207,818 - BBR_RS10995 0.64 +0.7 207,818 - BBR_RS10995 0.64 +0.6 207,818 - BBR_RS10995 0.64 +0.2
Or see this region's nucleotide sequence