Experiment: Motility_chemotaxis; Brachypodium roots in 0.5x MS; outer cut
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000414 and ABIE53_000415 are separated by 307 nucleotides ABIE53_000415 and ABIE53_000416 overlap by 34 nucleotides ABIE53_000416 and ABIE53_000417 are separated by 103 nucleotides
ABIE53_000414: ABIE53_000414 - homoserine O-acetyltransferase, at 447,700 to 448,845
_000414
ABIE53_000415: ABIE53_000415 - TetR/AcrR family transcriptional regulator, at 449,153 to 449,827
_000415
ABIE53_000416: ABIE53_000416 - pyrimidine 5'-nucleotidase, at 449,794 to 450,597
_000416
ABIE53_000417: ABIE53_000417 - acetylglutamate kinase, at 450,701 to 451,600
_000417
Position (kb) 449
450
451 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 448.877 kb on + strand at 448.934 kb on + strand at 448.944 kb on + strand at 448.944 kb on + strand at 448.944 kb on + strand at 448.945 kb on - strand at 448.945 kb on - strand at 448.945 kb on - strand at 448.945 kb on - strand at 448.945 kb on - strand at 448.945 kb on - strand at 448.945 kb on - strand at 448.945 kb on - strand at 448.946 kb on + strand at 448.947 kb on - strand at 448.947 kb on - strand at 448.947 kb on - strand at 448.947 kb on - strand at 449.009 kb on + strand at 449.009 kb on + strand at 449.009 kb on + strand at 449.010 kb on - strand at 449.010 kb on - strand at 449.010 kb on - strand at 449.012 kb on + strand at 449.012 kb on + strand at 449.012 kb on + strand at 449.012 kb on + strand at 449.012 kb on + strand at 449.012 kb on + strand at 449.013 kb on - strand at 449.013 kb on - strand at 449.013 kb on - strand at 449.013 kb on - strand at 449.013 kb on - strand at 449.013 kb on - strand at 449.013 kb on - strand at 449.013 kb on - strand at 449.013 kb on - strand at 449.013 kb on - strand at 449.013 kb on - strand at 449.013 kb on - strand at 449.042 kb on + strand at 449.042 kb on + strand at 449.063 kb on + strand at 449.063 kb on + strand at 449.063 kb on + strand at 449.063 kb on + strand at 449.064 kb on - strand at 449.092 kb on + strand at 449.092 kb on + strand at 449.092 kb on + strand at 449.092 kb on + strand at 449.093 kb on - strand at 449.093 kb on - strand at 449.093 kb on - strand at 449.093 kb on - strand at 449.093 kb on - strand at 449.155 kb on - strand at 449.155 kb on - strand at 449.247 kb on + strand, within ABIE53_000415 at 449.247 kb on + strand, within ABIE53_000415 at 449.247 kb on + strand, within ABIE53_000415 at 449.247 kb on + strand, within ABIE53_000415 at 449.247 kb on + strand, within ABIE53_000415 at 449.247 kb on + strand, within ABIE53_000415 at 449.247 kb on + strand, within ABIE53_000415 at 449.247 kb on + strand, within ABIE53_000415 at 449.247 kb on + strand, within ABIE53_000415 at 449.247 kb on + strand, within ABIE53_000415 at 449.247 kb on + strand, within ABIE53_000415 at 449.247 kb on + strand, within ABIE53_000415 at 449.247 kb on + strand, within ABIE53_000415 at 449.247 kb on + strand, within ABIE53_000415 at 449.247 kb on + strand, within ABIE53_000415 at 449.247 kb on + strand, within ABIE53_000415 at 449.247 kb on + strand, within ABIE53_000415 at 449.248 kb on - strand, within ABIE53_000415 at 449.248 kb on - strand, within ABIE53_000415 at 449.248 kb on - strand, within ABIE53_000415 at 449.248 kb on - strand, within ABIE53_000415 at 449.248 kb on - strand, within ABIE53_000415 at 449.248 kb on - strand, within ABIE53_000415 at 449.248 kb on - strand, within ABIE53_000415 at 449.248 kb on - strand, within ABIE53_000415 at 449.248 kb on - strand, within ABIE53_000415 at 449.248 kb on - strand, within ABIE53_000415 at 449.248 kb on - strand, within ABIE53_000415 at 449.283 kb on + strand, within ABIE53_000415 at 449.283 kb on + strand, within ABIE53_000415 at 449.283 kb on + strand, within ABIE53_000415 at 449.283 kb on + strand, within ABIE53_000415 at 449.284 kb on - strand, within ABIE53_000415 at 449.284 kb on - strand, within ABIE53_000415 at 449.284 kb on - strand, within ABIE53_000415 at 449.514 kb on - strand, within ABIE53_000415 at 449.514 kb on - strand, within ABIE53_000415 at 449.583 kb on - strand, within ABIE53_000415 at 449.622 kb on + strand, within ABIE53_000415 at 449.622 kb on + strand, within ABIE53_000415 at 449.623 kb on - strand, within ABIE53_000415 at 449.623 kb on - strand, within ABIE53_000415 at 449.915 kb on + strand, within ABIE53_000416 at 449.915 kb on + strand, within ABIE53_000416 at 449.915 kb on + strand, within ABIE53_000416 at 449.915 kb on + strand, within ABIE53_000416 at 449.915 kb on + strand, within ABIE53_000416 at 449.915 kb on + strand, within ABIE53_000416 at 449.915 kb on + strand, within ABIE53_000416 at 449.916 kb on - strand, within ABIE53_000416 at 449.916 kb on - strand, within ABIE53_000416 at 449.916 kb on - strand, within ABIE53_000416 at 449.961 kb on + strand, within ABIE53_000416 at 449.961 kb on + strand, within ABIE53_000416 at 449.962 kb on - strand, within ABIE53_000416 at 449.962 kb on - strand, within ABIE53_000416 at 449.970 kb on + strand, within ABIE53_000416 at 449.971 kb on - strand, within ABIE53_000416 at 449.971 kb on - strand, within ABIE53_000416 at 450.020 kb on + strand, within ABIE53_000416 at 450.020 kb on + strand, within ABIE53_000416 at 450.020 kb on + strand, within ABIE53_000416 at 450.021 kb on - strand, within ABIE53_000416 at 450.021 kb on - strand, within ABIE53_000416 at 450.147 kb on + strand, within ABIE53_000416 at 450.147 kb on + strand, within ABIE53_000416 at 450.147 kb on + strand, within ABIE53_000416 at 450.147 kb on + strand, within ABIE53_000416 at 450.147 kb on + strand, within ABIE53_000416 at 450.147 kb on + strand, within ABIE53_000416 at 450.147 kb on + strand, within ABIE53_000416 at 450.148 kb on - strand, within ABIE53_000416 at 450.154 kb on + strand, within ABIE53_000416 at 450.154 kb on + strand, within ABIE53_000416 at 450.154 kb on + strand, within ABIE53_000416 at 450.154 kb on + strand, within ABIE53_000416 at 450.155 kb on - strand, within ABIE53_000416 at 450.155 kb on - strand, within ABIE53_000416 at 450.155 kb on - strand, within ABIE53_000416 at 450.155 kb on - strand, within ABIE53_000416 at 450.215 kb on + strand, within ABIE53_000416 at 450.215 kb on + strand, within ABIE53_000416 at 450.215 kb on + strand, within ABIE53_000416 at 450.215 kb on + strand, within ABIE53_000416 at 450.215 kb on + strand, within ABIE53_000416 at 450.216 kb on - strand, within ABIE53_000416 at 450.216 kb on - strand, within ABIE53_000416 at 450.216 kb on - strand, within ABIE53_000416 at 450.216 kb on - strand, within ABIE53_000416 at 450.392 kb on + strand, within ABIE53_000416 at 450.404 kb on + strand, within ABIE53_000416 at 450.405 kb on - strand, within ABIE53_000416 at 450.461 kb on + strand, within ABIE53_000416 at 450.461 kb on + strand, within ABIE53_000416 at 450.461 kb on + strand, within ABIE53_000416 at 450.461 kb on + strand, within ABIE53_000416 at 450.461 kb on + strand, within ABIE53_000416 at 450.461 kb on + strand, within ABIE53_000416 at 450.462 kb on - strand, within ABIE53_000416 at 450.462 kb on - strand, within ABIE53_000416 at 450.462 kb on - strand, within ABIE53_000416 at 450.462 kb on - strand, within ABIE53_000416 at 450.519 kb on + strand at 450.519 kb on + strand at 450.519 kb on + strand at 450.520 kb on - strand at 450.520 kb on - strand at 450.520 kb on - strand at 450.520 kb on - strand at 450.520 kb on - strand at 450.520 kb on - strand at 450.520 kb on - strand at 450.520 kb on - strand at 450.784 kb on + strand at 451.017 kb on + strand, within ABIE53_000417 at 451.017 kb on + strand, within ABIE53_000417 at 451.017 kb on + strand, within ABIE53_000417
Per-strain Table
Position Strand Gene LocusTag Fraction Motility_chemotaxis; Brachypodium roots in 0.5x MS; outer cut remove 448,877 + +1.3 448,934 + -0.7 448,944 + -1.7 448,944 + -1.3 448,944 + +0.1 448,945 - -0.3 448,945 - -0.6 448,945 - -0.4 448,945 - +1.3 448,945 - +1.9 448,945 - -0.7 448,945 - +0.3 448,945 - +0.5 448,946 + +0.7 448,947 - +1.1 448,947 - +0.3 448,947 - -1.3 448,947 - +2.6 449,009 + -1.1 449,009 + -3.1 449,009 + +0.3 449,010 - -0.8 449,010 - -0.4 449,010 - -2.7 449,012 + -2.5 449,012 + -2.7 449,012 + +0.3 449,012 + -0.9 449,012 + -2.5 449,012 + +0.3 449,013 - +0.1 449,013 - +0.5 449,013 - -0.7 449,013 - +0.3 449,013 - +0.2 449,013 - -0.1 449,013 - -1.4 449,013 - +0.8 449,013 - +0.7 449,013 - +0.9 449,013 - +1.5 449,013 - -1.3 449,042 + +0.3 449,042 + -0.6 449,063 + -0.3 449,063 + -2.3 449,063 + +1.3 449,063 + -0.3 449,064 - -1.3 449,092 + -1.3 449,092 + -0.6 449,092 + +0.3 449,092 + -1.7 449,093 - -0.6 449,093 - -1.7 449,093 - -0.7 449,093 - +0.1 449,093 - +0.3 449,155 - -1.7 449,155 - +0.9 449,247 + ABIE53_000415 0.14 -1.8 449,247 + ABIE53_000415 0.14 +0.0 449,247 + ABIE53_000415 0.14 -0.4 449,247 + ABIE53_000415 0.14 +1.1 449,247 + ABIE53_000415 0.14 -0.3 449,247 + ABIE53_000415 0.14 -1.0 449,247 + ABIE53_000415 0.14 +1.8 449,247 + ABIE53_000415 0.14 -1.3 449,247 + ABIE53_000415 0.14 -0.5 449,247 + ABIE53_000415 0.14 -1.3 449,247 + ABIE53_000415 0.14 +0.3 449,247 + ABIE53_000415 0.14 -2.1 449,247 + ABIE53_000415 0.14 -1.3 449,247 + ABIE53_000415 0.14 -2.5 449,247 + ABIE53_000415 0.14 -1.2 449,247 + ABIE53_000415 0.14 -1.4 449,247 + ABIE53_000415 0.14 -1.3 449,248 - ABIE53_000415 0.14 +1.1 449,248 - ABIE53_000415 0.14 +1.6 449,248 - ABIE53_000415 0.14 -0.2 449,248 - ABIE53_000415 0.14 -2.0 449,248 - ABIE53_000415 0.14 +0.5 449,248 - ABIE53_000415 0.14 +0.2 449,248 - ABIE53_000415 0.14 +0.3 449,248 - ABIE53_000415 0.14 +0.9 449,248 - ABIE53_000415 0.14 -0.3 449,248 - ABIE53_000415 0.14 -1.2 449,248 - ABIE53_000415 0.14 +2.9 449,283 + ABIE53_000415 0.19 -0.7 449,283 + ABIE53_000415 0.19 +0.6 449,283 + ABIE53_000415 0.19 -0.4 449,283 + ABIE53_000415 0.19 +0.3 449,284 - ABIE53_000415 0.19 +0.1 449,284 - ABIE53_000415 0.19 +0.9 449,284 - ABIE53_000415 0.19 +1.3 449,514 - ABIE53_000415 0.53 +1.9 449,514 - ABIE53_000415 0.53 -0.0 449,583 - ABIE53_000415 0.64 +1.6 449,622 + ABIE53_000415 0.69 +0.1 449,622 + ABIE53_000415 0.69 -1.1 449,623 - ABIE53_000415 0.70 +1.3 449,623 - ABIE53_000415 0.70 +1.5 449,915 + ABIE53_000416 0.15 +1.0 449,915 + ABIE53_000416 0.15 +0.3 449,915 + ABIE53_000416 0.15 -1.7 449,915 + ABIE53_000416 0.15 -0.6 449,915 + ABIE53_000416 0.15 -2.3 449,915 + ABIE53_000416 0.15 -0.7 449,915 + ABIE53_000416 0.15 +0.3 449,916 - ABIE53_000416 0.15 -1.5 449,916 - ABIE53_000416 0.15 -1.7 449,916 - ABIE53_000416 0.15 +0.7 449,961 + ABIE53_000416 0.21 -1.3 449,961 + ABIE53_000416 0.21 -0.3 449,962 - ABIE53_000416 0.21 +2.3 449,962 - ABIE53_000416 0.21 +2.7 449,970 + ABIE53_000416 0.22 +0.8 449,971 - ABIE53_000416 0.22 -0.1 449,971 - ABIE53_000416 0.22 +1.1 450,020 + ABIE53_000416 0.28 +0.7 450,020 + ABIE53_000416 0.28 -1.3 450,020 + ABIE53_000416 0.28 -1.5 450,021 - ABIE53_000416 0.28 -0.4 450,021 - ABIE53_000416 0.28 -2.0 450,147 + ABIE53_000416 0.44 -0.7 450,147 + ABIE53_000416 0.44 -0.6 450,147 + ABIE53_000416 0.44 +0.3 450,147 + ABIE53_000416 0.44 -1.3 450,147 + ABIE53_000416 0.44 -0.7 450,147 + ABIE53_000416 0.44 +1.3 450,147 + ABIE53_000416 0.44 +0.3 450,148 - ABIE53_000416 0.44 -0.6 450,154 + ABIE53_000416 0.45 +0.3 450,154 + ABIE53_000416 0.45 +1.3 450,154 + ABIE53_000416 0.45 +0.7 450,154 + ABIE53_000416 0.45 -1.3 450,155 - ABIE53_000416 0.45 -0.9 450,155 - ABIE53_000416 0.45 +1.3 450,155 - ABIE53_000416 0.45 +2.3 450,155 - ABIE53_000416 0.45 -0.7 450,215 + ABIE53_000416 0.52 -1.3 450,215 + ABIE53_000416 0.52 -0.5 450,215 + ABIE53_000416 0.52 -0.8 450,215 + ABIE53_000416 0.52 +0.0 450,215 + ABIE53_000416 0.52 -0.3 450,216 - ABIE53_000416 0.52 -2.0 450,216 - ABIE53_000416 0.52 -0.7 450,216 - ABIE53_000416 0.52 +0.1 450,216 - ABIE53_000416 0.52 -0.1 450,392 + ABIE53_000416 0.74 -0.8 450,404 + ABIE53_000416 0.76 +1.2 450,405 - ABIE53_000416 0.76 -1.3 450,461 + ABIE53_000416 0.83 +1.2 450,461 + ABIE53_000416 0.83 -0.7 450,461 + ABIE53_000416 0.83 -0.0 450,461 + ABIE53_000416 0.83 -0.7 450,461 + ABIE53_000416 0.83 +0.7 450,461 + ABIE53_000416 0.83 -0.7 450,462 - ABIE53_000416 0.83 +0.3 450,462 - ABIE53_000416 0.83 -0.2 450,462 - ABIE53_000416 0.83 +4.4 450,462 - ABIE53_000416 0.83 -0.3 450,519 + +1.3 450,519 + -0.4 450,519 + +0.2 450,520 - -1.3 450,520 - +0.3 450,520 - -0.7 450,520 - +1.1 450,520 - -1.7 450,520 - -0.7 450,520 - -0.3 450,520 - +0.3 450,784 + +0.3 451,017 + ABIE53_000417 0.35 -1.3 451,017 + ABIE53_000417 0.35 -2.3 451,017 + ABIE53_000417 0.35 -3.1
Or see this region's nucleotide sequence