Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1540

Experiment: MoLS4 with L-Histidine as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntglpX and purU are separated by 191 nucleotidespurU and DVU1541 are separated by 105 nucleotidesDVU1541 and DVU1542 are separated by 177 nucleotides DVU1539: glpX - fructose-1,6-bisphosphatase, class II (TIGR), at 1,605,816 to 1,606,799 glpX DVU1540: purU - formyltetrahydrofolate deformylase (TIGR), at 1,606,991 to 1,607,845 purU DVU1541: DVU1541 - hypothetical protein (TIGR), at 1,607,951 to 1,608,352 DVU1541 DVU1542: DVU1542 - hypothetical protein (TIGR), at 1,608,530 to 1,608,757 DVU1542 Position (kb) 1606 1607 1608Strain fitness (log2 ratio) -2 -1 0 1at 1606.824 kb on - strandat 1606.912 kb on + strandat 1606.914 kb on + strandat 1606.914 kb on + strandat 1606.942 kb on + strandat 1607.073 kb on - strandat 1607.099 kb on - strand, within purUat 1607.175 kb on + strand, within purUat 1607.203 kb on + strand, within purUat 1607.224 kb on + strand, within purUat 1607.235 kb on + strand, within purUat 1607.253 kb on - strand, within purUat 1607.253 kb on - strand, within purUat 1607.314 kb on - strand, within purUat 1607.375 kb on - strand, within purUat 1607.375 kb on - strand, within purUat 1607.398 kb on - strand, within purUat 1607.408 kb on - strand, within purUat 1607.637 kb on + strand, within purUat 1607.814 kb on - strandat 1607.898 kb on - strandat 1607.915 kb on - strandat 1607.915 kb on - strandat 1607.950 kb on + strandat 1608.550 kb on - strandat 1608.617 kb on + strand, within DVU1542at 1608.620 kb on + strand, within DVU1542

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Histidine as nutrient 10mM
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1,606,824 - -0.7
1,606,912 + -0.2
1,606,914 + -1.4
1,606,914 + -0.1
1,606,942 + +0.1
1,607,073 - -1.3
1,607,099 - purU DVU1540 0.13 -0.5
1,607,175 + purU DVU1540 0.22 -1.9
1,607,203 + purU DVU1540 0.25 -1.1
1,607,224 + purU DVU1540 0.27 -1.6
1,607,235 + purU DVU1540 0.29 -2.3
1,607,253 - purU DVU1540 0.31 -1.3
1,607,253 - purU DVU1540 0.31 -2.0
1,607,314 - purU DVU1540 0.38 -0.3
1,607,375 - purU DVU1540 0.45 -1.6
1,607,375 - purU DVU1540 0.45 -1.7
1,607,398 - purU DVU1540 0.48 -0.6
1,607,408 - purU DVU1540 0.49 +1.4
1,607,637 + purU DVU1540 0.76 +0.9
1,607,814 - -1.8
1,607,898 - -0.7
1,607,915 - -0.7
1,607,915 - -0.4
1,607,950 + +0.5
1,608,550 - -0.2
1,608,617 + DVU1542 0.38 -0.4
1,608,620 + DVU1542 0.39 -0.2

Or see this region's nucleotide sequence