Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0970

Experiment: MoLS4 with L-Histidine as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0968 and DVU0969 are separated by 247 nucleotidesDVU0969 and DVU0970 are separated by 2 nucleotidesDVU0970 and DVU0971 overlap by 1 nucleotidesDVU0971 and DVU0972 are separated by 38 nucleotides DVU0968: DVU0968 - amino acid ABC transporter, ATP-binding protein (TIGR), at 1,065,276 to 1,066,016 DVU0968 DVU0969: DVU0969 - efflux protein, LysE family (TIGR), at 1,066,264 to 1,067,010 DVU0969 DVU0970: DVU0970 - lipoprotein, putative (TIGR), at 1,067,013 to 1,067,552 DVU0970 DVU0971: DVU0971 - molybdenum cofactor biosynthesis protein (TIGR), at 1,067,552 to 1,068,331 DVU0971 DVU0972: DVU0972 - HD domain protein (TIGR), at 1,068,370 to 1,069,635 DVU0972 Position (kb) 1067 1068Strain fitness (log2 ratio) -2 -1 0 1at 1066.040 kb on - strandat 1066.143 kb on - strandat 1066.258 kb on - strandat 1066.311 kb on - strandat 1066.342 kb on - strand, within DVU0969at 1066.387 kb on + strand, within DVU0969at 1066.387 kb on + strand, within DVU0969at 1066.387 kb on + strand, within DVU0969at 1066.387 kb on + strand, within DVU0969at 1066.387 kb on + strand, within DVU0969at 1066.387 kb on + strand, within DVU0969at 1066.395 kb on - strand, within DVU0969at 1066.395 kb on - strand, within DVU0969at 1066.405 kb on - strand, within DVU0969at 1066.427 kb on + strand, within DVU0969at 1066.506 kb on - strand, within DVU0969at 1066.679 kb on - strand, within DVU0969at 1066.845 kb on + strand, within DVU0969at 1066.853 kb on - strand, within DVU0969at 1066.881 kb on + strand, within DVU0969at 1066.912 kb on + strand, within DVU0969at 1066.920 kb on - strand, within DVU0969at 1066.930 kb on - strand, within DVU0969at 1067.089 kb on - strand, within DVU0970at 1067.179 kb on + strand, within DVU0970at 1067.287 kb on + strand, within DVU0970at 1067.474 kb on + strand, within DVU0970at 1067.482 kb on - strand, within DVU0970at 1067.496 kb on + strand, within DVU0970at 1067.504 kb on - strandat 1067.597 kb on + strandat 1067.760 kb on + strand, within DVU0971at 1067.828 kb on - strand, within DVU0971at 1067.829 kb on + strand, within DVU0971at 1067.908 kb on + strand, within DVU0971at 1067.931 kb on + strand, within DVU0971at 1067.966 kb on - strand, within DVU0971at 1067.981 kb on + strand, within DVU0971at 1067.981 kb on + strand, within DVU0971at 1068.005 kb on + strand, within DVU0971at 1068.065 kb on - strand, within DVU0971at 1068.149 kb on - strand, within DVU0971at 1068.240 kb on - strand, within DVU0971at 1068.240 kb on - strand, within DVU0971at 1068.277 kb on + strandat 1068.285 kb on - strandat 1068.287 kb on - strandat 1068.295 kb on + strandat 1068.335 kb on - strandat 1068.389 kb on - strandat 1068.495 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Histidine as nutrient 10mM
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1,066,040 - -0.5
1,066,143 - -0.8
1,066,258 - -0.6
1,066,311 - -0.7
1,066,342 - DVU0969 0.10 +0.4
1,066,387 + DVU0969 0.16 +0.1
1,066,387 + DVU0969 0.16 -0.4
1,066,387 + DVU0969 0.16 -1.1
1,066,387 + DVU0969 0.16 +0.0
1,066,387 + DVU0969 0.16 +0.0
1,066,387 + DVU0969 0.16 -0.0
1,066,395 - DVU0969 0.18 +0.1
1,066,395 - DVU0969 0.18 -0.5
1,066,405 - DVU0969 0.19 +0.3
1,066,427 + DVU0969 0.22 +0.9
1,066,506 - DVU0969 0.32 -0.1
1,066,679 - DVU0969 0.56 +0.4
1,066,845 + DVU0969 0.78 -0.0
1,066,853 - DVU0969 0.79 +0.5
1,066,881 + DVU0969 0.83 +0.0
1,066,912 + DVU0969 0.87 -0.9
1,066,920 - DVU0969 0.88 -2.0
1,066,930 - DVU0969 0.89 -0.1
1,067,089 - DVU0970 0.14 +0.6
1,067,179 + DVU0970 0.31 -0.3
1,067,287 + DVU0970 0.51 +0.1
1,067,474 + DVU0970 0.85 -1.1
1,067,482 - DVU0970 0.87 -0.5
1,067,496 + DVU0970 0.89 -0.4
1,067,504 - -1.8
1,067,597 + +0.4
1,067,760 + DVU0971 0.27 -0.6
1,067,828 - DVU0971 0.35 +0.4
1,067,829 + DVU0971 0.36 -0.3
1,067,908 + DVU0971 0.46 +0.2
1,067,931 + DVU0971 0.49 +0.5
1,067,966 - DVU0971 0.53 +0.8
1,067,981 + DVU0971 0.55 -0.6
1,067,981 + DVU0971 0.55 +0.7
1,068,005 + DVU0971 0.58 -0.1
1,068,065 - DVU0971 0.66 -0.4
1,068,149 - DVU0971 0.77 -0.4
1,068,240 - DVU0971 0.88 -0.6
1,068,240 - DVU0971 0.88 +0.3
1,068,277 + +0.2
1,068,285 - +0.3
1,068,287 - +0.1
1,068,295 + -0.2
1,068,335 - -0.1
1,068,389 - +0.4
1,068,495 + -0.6

Or see this region's nucleotide sequence