Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_B2637

Experiment: Biofilm Wash/Settlers in Fresh BG11R in Test Tubes with Spin rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Biofilm Wash/Settlers in Fresh BG11R in Test Tubes with Spin rep 1
322	+		Synpcc7942_B2615	0.78	-1.2
360	+		Synpcc7942_B2615	0.89	+1.8
360	+		Synpcc7942_B2615	0.89	-0.7
360	+		Synpcc7942_B2615	0.89	-1.2
373	+				+0.6
373	+				-1.0
373	+				+1.6
373	+				-0.4
373	+				-0.8
373	+				-2.7
373	+				+0.5
373	+				+0.5
373	+				-0.9
373	+				-1.1
381	-				+1.3
381	-				+2.8
381	-				+0.5
381	-				+1.6
381	-				+0.2
381	-				+2.6
396	+				-0.5
401	+				-0.4
401	+				-1.1
401	+				+0.5
401	+				-1.3
401	+				+1.6
404	-				+1.4
404	-				-1.5
407	-				-1.4
409	-				-1.8
409	-				-1.1
409	-				+1.6
414	-				-0.7
414	-				-1.5
414	-				-1.3
431	+				+0.9
495	+				+1.6
495	+				-1.8
495	+				-0.6
495	+				-1.1
510	+				+0.0
512	+				+1.6
514	+				-2.1
565	-				+1.6
601	-	parB	Synpcc7942_B2626	0.13	+2.6
651	+	parB	Synpcc7942_B2626	0.19	+0.3
680	+	parB	Synpcc7942_B2626	0.22	+1.6
748	+	parB	Synpcc7942_B2626	0.30	+0.6
756	-	parB	Synpcc7942_B2626	0.31	+0.6
855	+	parB	Synpcc7942_B2626	0.43	+1.6
877	-	parB	Synpcc7942_B2626	0.46	+0.0
1,007	+	parB	Synpcc7942_B2626	0.62	+1.6
1,192	-	parB	Synpcc7942_B2626	0.84	-0.4
1,218	+	parB	Synpcc7942_B2626	0.87	+0.2
1,293	-				-2.4
1,293	-				+0.0
1,295	+				+0.8
1,303	-				-0.2
1,340	-				+1.0
1,362	-				+0.6
1,380	+	parA	Synpcc7942_B2637	0.10	+1.6
1,380	+	parA	Synpcc7942_B2637	0.10	+1.6
1,382	-	parA	Synpcc7942_B2637	0.10	+0.1
1,435	+	parA	Synpcc7942_B2637	0.19	+0.2
1,473	+	parA	Synpcc7942_B2637	0.25	-1.0
1,514	+	parA	Synpcc7942_B2637	0.32	+1.6
1,516	-				-1.6
1,567	+	parA	Synpcc7942_B2637	0.41	+1.6
1,573	-	parA	Synpcc7942_B2637	0.42	+0.6
1,630	+	parA	Synpcc7942_B2637	0.51	-2.4
1,643	-	parA	Synpcc7942_B2637	0.53	+0.6
1,657	-	parA	Synpcc7942_B2637	0.55	+1.6
1,678	-	parA	Synpcc7942_B2637	0.59	+0.6
1,691	-	parA	Synpcc7942_B2637	0.61	-2.2
1,710	-	parA	Synpcc7942_B2637	0.64	+0.0
1,710	-				-0.6
1,756	+	parA	Synpcc7942_B2637	0.72	-2.3
1,756	+	parA	Synpcc7942_B2637	0.72	+0.6
1,761	+	parA	Synpcc7942_B2637	0.72	-0.4
1,769	-	parA	Synpcc7942_B2637	0.74	+0.0
1,770	+	parA	Synpcc7942_B2637	0.74	-0.4
1,771	-	parA	Synpcc7942_B2637	0.74	+2.6
1,820	+	parA	Synpcc7942_B2637	0.82	-0.3
1,852	+	parA	Synpcc7942_B2637	0.87	-0.6
1,852	+	parA	Synpcc7942_B2637	0.87	-2.3
1,878	+				+1.6
1,878	+				+1.6
1,888	+				-1.0
1,913	+				-1.2
1,921	-				-2.7
1,923	+				-0.9
1,923	+				-0.7
1,923	+				-0.5
1,924	+				-0.8
1,931	-				-0.6
1,931	-				-1.0
1,935	+				+0.1
1,935	+				+2.1
1,935	+				-1.0
1,935	+				+0.2
1,936	+				+1.6
1,936	+				-0.3
1,936	+				+0.4
1,936	+				-3.0
1,936	+				-1.0
1,936	+				-0.9
1,936	+				+2.6
1,943	-				+0.9
1,943	-				-0.5
1,944	-				-1.6
1,944	-				-1.4
1,944	-				-0.6
1,944	-				+1.6
1,944	-				+3.2
1,960	+				+0.2
1,968	-				+1.2
1,972	+				+1.6
1,973	+				+2.6
1,979	+				+1.6
1,979	+				-0.7
1,979	+				-2.4
1,980	-				-1.4
1,981	-				-2.1
1,987	-				+2.2
1,999	+				+2.8
1,999	+				-0.7
1,999	+				-0.8
1,999	+				-1.6
1,999	+				-1.9
1,999	+				-1.7
2,005	-				-0.9
2,005	-				-0.6
2,007	-				-0.7
2,007	-				-1.9
2,007	-				+0.0
2,007	-				-1.9
2,007	-				+0.6
2,007	-				-1.4
2,007	-				+2.6
2,024	+				-0.9
2,024	+				-1.9
2,024	+				-2.2
2,037	+				+1.6
2,058	-				-1.3
2,311	+				-0.4
2,331	-				-1.1
2,332	-				+1.6
2,334	+				+2.2
2,357	-				-1.4
2,359	-				+1.6
2,364	+				+1.6
2,371	-				+2.7
2,378	+				-1.4
2,378	+				-1.6
2,378	+				-1.1
2,379	-	septT2	Synpcc7942_B2659	0.10	+2.0
2,386	-	septT2	Synpcc7942_B2659	0.12	-1.4
2,386	-	septT2	Synpcc7942_B2659	0.12	-2.3
2,386	-	septT2	Synpcc7942_B2659	0.12	-0.8
2,407	+	septT2	Synpcc7942_B2659	0.17	+0.6
2,407	+	septT2	Synpcc7942_B2659	0.17	-1.0
2,407	+	septT2	Synpcc7942_B2659	0.17	-0.5
2,407	+	septT2	Synpcc7942_B2659	0.17	-0.2
2,415	-	septT2	Synpcc7942_B2659	0.20	-1.3
2,417	+				+1.0
2,433	-	septT2	Synpcc7942_B2659	0.24	+0.3
2,444	-	septT2	Synpcc7942_B2659	0.27	-1.2
2,446	+	septT2	Synpcc7942_B2659	0.28	-1.4
2,446	+	septT2	Synpcc7942_B2659	0.28	+0.6
2,451	+	septT2	Synpcc7942_B2659	0.29	-0.3
2,454	-	septT2	Synpcc7942_B2659	0.30	-1.6
2,454	-	septT2	Synpcc7942_B2659	0.30	-1.1
2,455	+	septT2	Synpcc7942_B2659	0.30	+2.1
2,459	-	septT2	Synpcc7942_B2659	0.31	-0.3
2,461	+	septT2	Synpcc7942_B2659	0.32	+2.8
2,469	+				+1.3
2,494	-				-1.0
2,494	-	septT2	Synpcc7942_B2659	0.40	-1.3
2,494	-	septT2	Synpcc7942_B2659	0.40	+1.6
2,494	-	septT2	Synpcc7942_B2659	0.40	+1.0
2,514	+	septT2	Synpcc7942_B2659	0.45	-1.3
2,519	+	septT2	Synpcc7942_B2659	0.47	-0.2
2,569	+	septT2	Synpcc7942_B2659	0.60	+1.6
2,569	+	septT2	Synpcc7942_B2659	0.60	-2.7
2,569	+	septT2	Synpcc7942_B2659	0.60	+0.8
2,569	-	septT2	Synpcc7942_B2659	0.60	-2.3
2,571	+	septT2	Synpcc7942_B2659	0.60	+1.8
2,571	+	septT2	Synpcc7942_B2659	0.60	+1.6
2,577	-	septT2	Synpcc7942_B2659	0.62	-1.2
2,581	+	septT2	Synpcc7942_B2659	0.63	+2.2
2,589	-	septT2	Synpcc7942_B2659	0.65	+0.0
2,593	+	septT2	Synpcc7942_B2659	0.66	+0.6
2,616	-	septT2	Synpcc7942_B2659	0.72	-0.6
2,618	-	septT2	Synpcc7942_B2659	0.72	-0.0
2,633	+	septT2	Synpcc7942_B2659	0.76	-2.6
2,642	-	septT2	Synpcc7942_B2659	0.79	-1.3
2,662	+	septT2	Synpcc7942_B2659	0.84	-1.2
2,664	+	septT2	Synpcc7942_B2659	0.84	+4.4
2,670	-	septT2	Synpcc7942_B2659	0.86	+0.0
2,671	-	septT2	Synpcc7942_B2659	0.86	-0.7
2,672	+	septT2	Synpcc7942_B2659	0.86	-0.9
2,672	+	septT2	Synpcc7942_B2659	0.86	-0.5
2,672	-	septT2	Synpcc7942_B2659	0.86	-2.2
2,672	-	septT2	Synpcc7942_B2659	0.86	+0.4
2,672	-	septT2	Synpcc7942_B2659	0.86	+1.6
2,672	-	septT2	Synpcc7942_B2659	0.86	+0.4
2,672	-	septT2	Synpcc7942_B2659	0.86	-2.1
2,680	-	septT2	Synpcc7942_B2659	0.89	-1.1
2,680	-	septT2	Synpcc7942_B2659	0.89	+0.2
2,680	-	septT2	Synpcc7942_B2659	0.89	-0.1
2,688	+				+2.8
2,689	+				+2.1
2,697	-				+0.6
2,697	-				-0.8
2,697	-				-1.0
2,697	-				-1.3
2,698	+				+1.6
2,699	+				+0.7
2,699	+				+1.8
2,699	+				+0.0
2,707	-				-1.3
2,707	-				-0.6
2,707	-				-1.1
2,739	+				-0.1
2,739	+				+2.0
2,740	+				-0.9
2,740	+				-0.4
2,741	+				-2.3
2,748	-				+0.6
2,783	+		Synpcc7942_B2654	0.18	+0.1
2,849	+		Synpcc7942_B2654	0.37	-2.3
2,857	-		Synpcc7942_B2654	0.39	-0.7
2,857	-		Synpcc7942_B2654	0.39	-1.4
2,863	-		Synpcc7942_B2654	0.41	-1.1
2,883	+		Synpcc7942_B2654	0.46	-0.5
2,887	+		Synpcc7942_B2654	0.48	-0.9
2,890	-		Synpcc7942_B2654	0.48	+1.0
2,897	+		Synpcc7942_B2654	0.50	+0.8
2,913	-		Synpcc7942_B2654	0.55	-0.7
2,915	+		Synpcc7942_B2654	0.56	+0.1
2,924	+		Synpcc7942_B2654	0.58	+1.1
2,924	+		Synpcc7942_B2654	0.58	+1.3