Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2480

Experiment: Biofilm Wash/Settlers in Fresh BG11R in Test Tubes with Spin rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Biofilm Wash/Settlers in Fresh BG11R in Test Tubes with Spin rep 1
2,560,027	+				+1.0
2,560,027	+				-0.9
2,560,033	-				-0.7
2,560,107	-				-0.6
2,560,119	+				-2.5
2,560,127	-				+1.0
2,560,127	-				+1.2
2,560,196	-				-2.4
2,560,306	-				-0.4
2,560,322	+				-2.4
2,560,325	-				-1.0
2,560,353	+				-0.9
2,560,417	-				+0.3
2,560,435	+				+3.0
2,560,443	-		Synpcc7942_2479	0.12	-1.6
2,560,527	+		Synpcc7942_2479	0.27	+0.4
2,560,527	+		Synpcc7942_2479	0.27	-0.6
2,560,533	-		Synpcc7942_2479	0.28	+2.6
2,560,579	+		Synpcc7942_2479	0.36	+0.2
2,560,582	-		Synpcc7942_2479	0.37	+1.0
2,560,662	-		Synpcc7942_2479	0.51	+0.6
2,560,671	+		Synpcc7942_2479	0.52	-0.2
2,560,711	+		Synpcc7942_2479	0.59	-1.7
2,560,721	+		Synpcc7942_2479	0.61	+0.4
2,560,729	-		Synpcc7942_2479	0.62	-1.9
2,560,786	-		Synpcc7942_2479	0.72	+3.2
2,560,855	+		Synpcc7942_2479	0.85	-1.3
2,560,882	+		Synpcc7942_2479	0.89	+0.7
2,560,890	-				+3.0
2,560,891	-				-0.6
2,560,891	-				-0.4
2,560,901	-				+1.0
2,560,901	-				-0.7
2,560,907	-				+2.9
2,560,978	+				-0.6
2,561,047	-		Synpcc7942_2480	0.11	-0.3
2,561,062	+		Synpcc7942_2480	0.13	-0.7
2,561,139	-		Synpcc7942_2480	0.21	+1.0
2,561,222	-		Synpcc7942_2480	0.31	-0.0
2,561,437	-		Synpcc7942_2480	0.54	-2.4
2,561,696	+		Synpcc7942_2480	0.83	-1.0
2,561,940	+				+1.4
2,561,953	+				+1.0
2,561,990	+		Synpcc7942_2481	0.12	+0.7
2,561,991	+		Synpcc7942_2481	0.13	-1.8
2,561,999	-		Synpcc7942_2481	0.13	-0.6
2,562,054	+		Synpcc7942_2481	0.18	-0.5
2,562,054	+		Synpcc7942_2481	0.18	+0.4
2,562,054	+		Synpcc7942_2481	0.18	-0.6
2,562,054	+		Synpcc7942_2481	0.18	-0.6
2,562,068	+		Synpcc7942_2481	0.19	+0.6
2,562,076	-		Synpcc7942_2481	0.19	-1.2
2,562,088	+		Synpcc7942_2481	0.20	+3.8
2,562,096	-		Synpcc7942_2481	0.21	-0.4
2,562,143	+		Synpcc7942_2481	0.25	-2.2
2,562,150	+		Synpcc7942_2481	0.25	-1.6
2,562,151	-		Synpcc7942_2481	0.26	-3.1
2,562,151	-		Synpcc7942_2481	0.26	-0.0
2,562,156	+		Synpcc7942_2481	0.26	+1.0
2,562,158	-		Synpcc7942_2481	0.26	+1.6
2,562,158	-		Synpcc7942_2481	0.26	-1.2
2,562,174	+		Synpcc7942_2481	0.27	-1.0
2,562,179	+		Synpcc7942_2481	0.28	-0.6
2,562,182	-		Synpcc7942_2481	0.28	-0.6
2,562,187	-		Synpcc7942_2481	0.28	+1.7
2,562,187	-		Synpcc7942_2481	0.28	+1.6
2,562,187	-		Synpcc7942_2481	0.28	+1.0
2,562,187	-				-1.7
2,562,187	-		Synpcc7942_2481	0.28	+1.0
2,562,215	+		Synpcc7942_2481	0.31	-2.0
2,562,223	-		Synpcc7942_2481	0.31	-0.7
2,562,228	+		Synpcc7942_2481	0.32	-1.9
2,562,233	+		Synpcc7942_2481	0.32	+0.2
2,562,233	+		Synpcc7942_2481	0.32	+1.4
2,562,236	-		Synpcc7942_2481	0.32	-2.6
2,562,262	+		Synpcc7942_2481	0.35	-0.5
2,562,264	+		Synpcc7942_2481	0.35	-1.6
2,562,272	-		Synpcc7942_2481	0.35	-0.4
2,562,272	-		Synpcc7942_2481	0.35	+0.9
2,562,272	-		Synpcc7942_2481	0.35	+0.3
2,562,282	+		Synpcc7942_2481	0.36	+2.0
2,562,282	+		Synpcc7942_2481	0.36	+1.2
2,562,282	+		Synpcc7942_2481	0.36	-0.2
2,562,282	+		Synpcc7942_2481	0.36	-1.3
2,562,287	+		Synpcc7942_2481	0.37	+1.0
2,562,287	+		Synpcc7942_2481	0.37	-1.0
2,562,287	+		Synpcc7942_2481	0.37	-2.6
2,562,287	+		Synpcc7942_2481	0.37	+1.0
2,562,287	+		Synpcc7942_2481	0.37	-1.5
2,562,295	-		Synpcc7942_2481	0.37	-0.7
2,562,295	-				+0.3
2,562,358	+		Synpcc7942_2481	0.42	+0.4
2,562,447	+		Synpcc7942_2481	0.50	-0.8
2,562,542	+		Synpcc7942_2481	0.57	-1.4
2,562,665	-		Synpcc7942_2481	0.67	+1.0
2,562,688	-		Synpcc7942_2481	0.69	-0.8
2,562,710	-		Synpcc7942_2481	0.71	-0.9
2,562,770	-		Synpcc7942_2481	0.76	+0.4
2,562,770	-		Synpcc7942_2481	0.76	-0.3