Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1878

Experiment: Biofilm Wash/Settlers in Fresh BG11R in Test Tubes with Spin rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Biofilm Wash/Settlers in Fresh BG11R in Test Tubes with Spin rep 1
1,949,668	+		Synpcc7942_1877	0.50	+2.6
1,949,688	+		Synpcc7942_1877	0.51	-1.2
1,949,801	-		Synpcc7942_1877	0.57	-0.9
1,949,801	-		Synpcc7942_1877	0.57	+1.2
1,949,807	+				-2.9
1,949,830	+		Synpcc7942_1877	0.58	+1.6
1,949,847	-		Synpcc7942_1877	0.59	+0.2
1,949,850	-				+1.0
1,949,866	-		Synpcc7942_1877	0.60	-1.1
1,949,868	+		Synpcc7942_1877	0.60	-0.8
1,949,868	+		Synpcc7942_1877	0.60	+1.4
1,949,868	+		Synpcc7942_1877	0.60	-0.6
1,949,876	-		Synpcc7942_1877	0.61	-2.4
1,949,876	-		Synpcc7942_1877	0.61	-0.4
1,949,879	+		Synpcc7942_1877	0.61	-0.0
1,949,903	+				-1.7
1,949,903	+		Synpcc7942_1877	0.62	+1.0
1,949,911	-		Synpcc7942_1877	0.62	-1.4
1,949,911	-		Synpcc7942_1877	0.62	+1.1
1,949,911	-		Synpcc7942_1877	0.62	-1.2
1,949,911	-		Synpcc7942_1877	0.62	+0.3
1,950,006	-		Synpcc7942_1877	0.67	-1.8
1,950,082	+		Synpcc7942_1877	0.71	-0.0
1,950,096	+		Synpcc7942_1877	0.72	-0.9
1,950,096	+		Synpcc7942_1877	0.72	-1.4
1,950,096	+		Synpcc7942_1877	0.72	-1.2
1,950,101	+		Synpcc7942_1877	0.72	+0.4
1,950,101	-		Synpcc7942_1877	0.72	-0.9
1,950,104	-		Synpcc7942_1877	0.72	-2.0
1,950,104	-		Synpcc7942_1877	0.72	+0.3
1,950,109	-		Synpcc7942_1877	0.72	-1.4
1,950,109	-		Synpcc7942_1877	0.72	-0.8
1,950,143	+		Synpcc7942_1877	0.74	-1.5
1,950,169	-		Synpcc7942_1877	0.75	-0.3
1,950,182	+		Synpcc7942_1877	0.76	-1.2
1,950,193	-		Synpcc7942_1877	0.76	-0.6
1,950,198	-		Synpcc7942_1877	0.77	-0.0
1,950,272	-		Synpcc7942_1877	0.80	-0.5
1,950,272	-		Synpcc7942_1877	0.80	-2.0
1,950,294	+		Synpcc7942_1877	0.82	-0.5
1,950,309	-		Synpcc7942_1877	0.82	-3.6
1,950,311	+		Synpcc7942_1877	0.82	-1.0
1,950,334	-		Synpcc7942_1877	0.84	+1.0
1,950,336	+		Synpcc7942_1877	0.84	+2.0
1,950,344	-		Synpcc7942_1877	0.84	+1.0
1,950,364	-		Synpcc7942_1877	0.85	-1.7
1,950,397	-		Synpcc7942_1877	0.87	-1.6
1,950,397	-		Synpcc7942_1877	0.87	-0.8
1,950,405	+		Synpcc7942_1877	0.87	-0.0
1,950,415	+		Synpcc7942_1877	0.88	-0.6
1,950,418	-		Synpcc7942_1877	0.88	-0.5
1,950,418	-		Synpcc7942_1877	0.88	+0.7
1,950,421	+		Synpcc7942_1877	0.88	-0.4
1,950,423	-		Synpcc7942_1877	0.88	-2.6
1,950,433	+		Synpcc7942_1877	0.88	-1.3
1,950,434	+		Synpcc7942_1877	0.89	+2.6
1,950,434	-		Synpcc7942_1877	0.89	-1.1
1,950,442	-		Synpcc7942_1877	0.89	-1.6
1,950,442	-				-1.0
1,950,451	+		Synpcc7942_1877	0.89	-1.2
1,950,451	+		Synpcc7942_1877	0.89	-0.7
1,950,452	-		Synpcc7942_1877	0.89	-1.2
1,950,454	-		Synpcc7942_1877	0.90	-0.0
1,950,471	+				+1.0
1,950,479	-				-1.6
1,950,479	-				-0.4
1,950,479	-				-2.3
1,950,481	-				+0.2
1,950,490	+				+1.6
1,950,498	-				+2.0
1,950,588	+				-0.0
1,950,596	-				-1.1
1,950,621	+				+0.6
1,950,622	+				-0.8
1,950,629	-				-0.7
1,950,630	-				+0.2
1,950,630	-				+1.2
1,950,636	-				+0.3
1,950,646	+				-1.6
1,950,656	-				-1.3
1,950,659	-				-0.7
1,950,665	-				+0.6
1,950,679	-				+1.2
1,950,695	+				+0.4
1,950,711	-				-1.4
1,950,726	+				+0.7
1,950,735	-				-0.0
1,950,743	+				-0.0
1,950,743	+				-0.2
1,950,762	+		Synpcc7942_1878	0.10	+0.3
1,950,762	+		Synpcc7942_1878	0.10	-1.0
1,950,770	-		Synpcc7942_1878	0.11	-0.8
1,950,787	+		Synpcc7942_1878	0.13	-0.0
1,950,788	+		Synpcc7942_1878	0.13	-0.1
1,950,788	+		Synpcc7942_1878	0.13	-0.7
1,950,797	+		Synpcc7942_1878	0.14	+1.0
1,950,797	-		Synpcc7942_1878	0.14	-1.0
1,950,797	-				-1.4
1,950,797	-		Synpcc7942_1878	0.14	-0.0
1,950,799	+		Synpcc7942_1878	0.14	-2.3
1,950,799	+		Synpcc7942_1878	0.14	-0.0
1,950,799	+		Synpcc7942_1878	0.14	-0.0
1,950,799	+		Synpcc7942_1878	0.14	-0.0
1,950,799	+		Synpcc7942_1878	0.14	-1.0
1,950,807	-		Synpcc7942_1878	0.15	+1.0
1,950,807	-		Synpcc7942_1878	0.15	+1.0
1,950,813	-		Synpcc7942_1878	0.15	-1.5
1,950,813	-				-0.4
1,950,839	-		Synpcc7942_1878	0.18	-0.1
1,950,854	-		Synpcc7942_1878	0.20	-1.4
1,950,885	-		Synpcc7942_1878	0.23	-1.1
1,950,893	-		Synpcc7942_1878	0.23	-0.7
1,950,897	+		Synpcc7942_1878	0.24	-1.3
1,950,899	-		Synpcc7942_1878	0.24	+1.0
1,950,900	+		Synpcc7942_1878	0.24	-1.0
1,950,900	+		Synpcc7942_1878	0.24	-2.4
1,950,952	+		Synpcc7942_1878	0.29	-0.7
1,950,952	+		Synpcc7942_1878	0.29	-0.5
1,950,952	+		Synpcc7942_1878	0.29	-1.1
1,950,958	+		Synpcc7942_1878	0.30	-2.3
1,950,958	+		Synpcc7942_1878	0.30	+1.0
1,950,960	+		Synpcc7942_1878	0.30	-0.5
1,950,960	-		Synpcc7942_1878	0.30	+0.1
1,950,966	+		Synpcc7942_1878	0.31	-0.8
1,950,967	-		Synpcc7942_1878	0.31	-0.5
1,950,970	-		Synpcc7942_1878	0.31	-0.1
1,950,983	+		Synpcc7942_1878	0.33	+1.0
1,950,984	+		Synpcc7942_1878	0.33	-0.2
1,951,008	-		Synpcc7942_1878	0.35	-1.2
1,951,015	-		Synpcc7942_1878	0.36	-0.8
1,951,043	+		Synpcc7942_1878	0.39	-2.1
1,951,061	-		Synpcc7942_1878	0.40	-1.8
1,951,062	+		Synpcc7942_1878	0.40	-2.3
1,951,071	-		Synpcc7942_1878	0.41	-0.8
1,951,086	-		Synpcc7942_1878	0.43	+1.0
1,951,095	+		Synpcc7942_1878	0.44	-1.0
1,951,108	-		Synpcc7942_1878	0.45	-2.0
1,951,115	+		Synpcc7942_1878	0.46	-0.2
1,951,116	+		Synpcc7942_1878	0.46	-0.4
1,951,117	-		Synpcc7942_1878	0.46	-0.7
1,951,134	-		Synpcc7942_1878	0.48	-1.4
1,951,150	-		Synpcc7942_1878	0.49	-1.6
1,951,197	+		Synpcc7942_1878	0.54	-1.3
1,951,207	-		Synpcc7942_1878	0.55	+1.0
1,951,250	-		Synpcc7942_1878	0.59	-0.3
1,951,267	+		Synpcc7942_1878	0.61	-1.0
1,951,267	+		Synpcc7942_1878	0.61	+0.2
1,951,267	+		Synpcc7942_1878	0.61	+1.0
1,951,267	+		Synpcc7942_1878	0.61	-1.8
1,951,271	+		Synpcc7942_1878	0.62	-1.2
1,951,275	-		Synpcc7942_1878	0.62	-2.2
1,951,275	-		Synpcc7942_1878	0.62	-1.0
1,951,283	+		Synpcc7942_1878	0.63	-2.2
1,951,284	+		Synpcc7942_1878	0.63	+2.0
1,951,286	+				-1.8
1,951,289	+		Synpcc7942_1878	0.63	-1.6
1,951,291	+		Synpcc7942_1878	0.64	+1.0
1,951,297	-		Synpcc7942_1878	0.64	+1.0
1,951,309	+		Synpcc7942_1878	0.65	-1.0
1,951,362	+		Synpcc7942_1878	0.71	-1.8
1,951,368	+		Synpcc7942_1878	0.71	-0.0
1,951,370	-		Synpcc7942_1878	0.72	+0.2
1,951,681	+				-0.6
1,951,687	-				-2.9
1,951,689	-				+0.7
1,951,708	-				+1.0
1,951,708	-				-1.3
1,951,713	+				+0.3
1,951,734	-				-0.8
1,951,782	-	moxR	Synpcc7942_1879	0.14	+2.0
1,951,806	+	moxR	Synpcc7942_1879	0.17	-1.1
1,951,806	+	moxR	Synpcc7942_1879	0.17	-0.6
1,951,806	+	moxR	Synpcc7942_1879	0.17	-0.7
1,951,808	-	moxR	Synpcc7942_1879	0.17	+1.0
1,951,826	+	moxR	Synpcc7942_1879	0.19	+1.0
1,951,858	+	moxR	Synpcc7942_1879	0.22	-1.2
1,951,861	+				-1.4
1,951,869	-	moxR	Synpcc7942_1879	0.23	-1.0
1,951,892	+	moxR	Synpcc7942_1879	0.26	-1.5
1,951,900	-	moxR	Synpcc7942_1879	0.27	+0.2
1,951,962	-	moxR	Synpcc7942_1879	0.33	-1.8
1,951,976	-	moxR	Synpcc7942_1879	0.35	+0.6
1,951,992	+	moxR	Synpcc7942_1879	0.37	-0.4
1,951,992	+	moxR	Synpcc7942_1879	0.37	-1.9
1,952,052	-	moxR	Synpcc7942_1879	0.43	-2.3
1,952,054	+	moxR	Synpcc7942_1879	0.43	-0.6
1,952,062	-				+0.5
1,952,091	+	moxR	Synpcc7942_1879	0.47	-1.1
1,952,109	-	moxR	Synpcc7942_1879	0.49	+0.6
1,952,180	-	moxR	Synpcc7942_1879	0.57	+2.4
1,952,187	-	moxR	Synpcc7942_1879	0.57	-2.0
1,952,208	+	moxR	Synpcc7942_1879	0.60	+1.0
1,952,208	+	moxR	Synpcc7942_1879	0.60	-2.2
1,952,210	+	moxR	Synpcc7942_1879	0.60	+1.0
1,952,216	-	moxR	Synpcc7942_1879	0.60	+1.0
1,952,397	+	moxR	Synpcc7942_1879	0.80	-0.2
1,952,410	-	moxR	Synpcc7942_1879	0.81	+0.2
1,952,480	+	moxR	Synpcc7942_1879	0.88	-1.4
1,952,533	-				-0.0
1,952,542	-				-0.9
1,952,542	-				-2.0
1,952,546	+				+2.0
1,952,568	+				-1.5
1,952,579	+				-1.3
1,952,592	-				-1.4
1,952,592	-				-0.7
1,952,592	-				-1.0
1,952,594	+				+1.0
1,952,599	+				-0.0
1,952,602	-				-0.2
1,952,624	-				+0.4
1,952,630	+				-2.1
1,952,637	-				-1.2