Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1657

Experiment: Biofilm Wash/Settlers in Fresh BG11R in Test Tubes with Spin rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Biofilm Wash/Settlers in Fresh BG11R in Test Tubes with Spin rep 1
1,727,468	+	katG	Synpcc7942_1656	0.72	+1.3
1,727,476	-	katG	Synpcc7942_1656	0.72	-2.5
1,727,476	-	katG	Synpcc7942_1656	0.72	+0.1
1,727,476	-	katG	Synpcc7942_1656	0.72	+1.0
1,727,482	+	katG	Synpcc7942_1656	0.72	-0.8
1,727,507	-	katG	Synpcc7942_1656	0.73	-0.3
1,727,625	-	katG	Synpcc7942_1656	0.79	-1.6
1,727,695	+				+1.0
1,727,735	+	katG	Synpcc7942_1656	0.84	+1.0
1,727,767	+	katG	Synpcc7942_1656	0.85	+0.0
1,727,823	-	katG	Synpcc7942_1656	0.88	-2.0
1,727,895	+				-1.2
1,728,046	+				+1.0
1,728,206	-				-0.8
1,728,243	-				-1.7
1,728,245	+				-0.3
1,728,250	-				-0.5
1,728,281	-				-1.6
1,728,378	+				-1.2
1,728,401	-				-0.7
1,728,405	+				+1.0
1,728,408	-				-1.3
1,728,410	+				-1.1
1,728,421	+				-1.6
1,728,422	+				-0.6
1,728,422	+				-3.1
1,728,422	+				+0.6
1,728,512	+		Synpcc7942_1657	0.27	+3.0
1,728,515	+		Synpcc7942_1657	0.28	-0.7
1,728,535	-		Synpcc7942_1657	0.37	-0.6
1,728,548	+		Synpcc7942_1657	0.43	-3.2
1,728,569	-		Synpcc7942_1657	0.52	-0.6
1,728,569	-		Synpcc7942_1657	0.52	-0.6
1,728,643	+		Synpcc7942_1657	0.86	-0.6
1,728,643	+		Synpcc7942_1657	0.86	-0.6
1,728,648	+		Synpcc7942_1657	0.88	-0.9
1,728,661	-				-1.0
1,728,715	+				-1.3
1,728,733	-				+2.9
1,728,735	+				+1.9
1,728,735	+				-0.2
1,728,743	-				-2.6
1,728,743	-				-2.8
1,728,751	-				+0.0
1,728,785	-				+1.6
1,728,875	+		Synpcc7942_1658	0.19	+0.0
1,728,875	+		Synpcc7942_1658	0.19	-0.8
1,728,883	-		Synpcc7942_1658	0.21	-0.6
1,728,951	-		Synpcc7942_1658	0.36	+0.7
1,728,951	-				-1.8
1,728,955	+		Synpcc7942_1658	0.36	+1.0
1,728,965	+		Synpcc7942_1658	0.39	+1.0
1,728,982	+		Synpcc7942_1658	0.42	-0.6
1,728,999	+		Synpcc7942_1658	0.46	-0.1
1,729,002	-		Synpcc7942_1658	0.47	-0.6
1,729,007	-		Synpcc7942_1658	0.48	-0.8
1,729,018	-		Synpcc7942_1658	0.50	+0.0
1,729,030	-		Synpcc7942_1658	0.53	-1.3
1,729,034	+		Synpcc7942_1658	0.54	-2.5
1,729,034	+		Synpcc7942_1658	0.54	-0.6
1,729,045	+		Synpcc7942_1658	0.56	+0.0
1,729,045	+		Synpcc7942_1658	0.56	+0.0
1,729,045	+		Synpcc7942_1658	0.56	-1.6
1,729,045	+		Synpcc7942_1658	0.56	+1.0
1,729,100	+		Synpcc7942_1658	0.68	-0.6
1,729,108	-		Synpcc7942_1658	0.70	-0.6
1,729,163	-		Synpcc7942_1658	0.82	-1.6
1,729,186	+		Synpcc7942_1658	0.87	+0.0
1,729,188	-		Synpcc7942_1658	0.87	+0.6
1,729,194	-		Synpcc7942_1658	0.88	+0.6
1,729,194	-		Synpcc7942_1658	0.88	+1.0
1,729,194	-		Synpcc7942_1658	0.88	+1.2
1,729,217	-				+1.0
1,729,223	+				+0.6
1,729,223	+				+1.0
1,729,223	+				-1.0
1,729,231	-				-2.0
1,729,244	-				+2.0
1,729,255	-				-1.2
1,729,272	-				+0.0
1,729,293	-				-0.5
1,729,311	+				-0.6
1,729,311	+				-2.0
1,729,319	-				+1.0
1,729,340	+				+1.0
1,729,359	-				-1.2
1,729,359	-				+0.0
1,729,361	+				+1.3
1,729,374	-				+1.0
1,729,387	-				-1.1
1,729,415	-				-1.3
1,729,423	-				+1.3
1,729,483	-		Synpcc7942_1659	0.15	-0.2
1,729,496	+		Synpcc7942_1659	0.17	-1.9
1,729,496	+		Synpcc7942_1659	0.17	-0.2
1,729,496	+		Synpcc7942_1659	0.17	+2.1
1,729,501	+		Synpcc7942_1659	0.18	-0.8
1,729,504	-		Synpcc7942_1659	0.19	-1.8
1,729,504	-		Synpcc7942_1659	0.19	+1.6
1,729,514	+		Synpcc7942_1659	0.20	-0.3
1,729,520	-		Synpcc7942_1659	0.21	-2.2
1,729,531	-		Synpcc7942_1659	0.23	+1.0
1,729,532	-		Synpcc7942_1659	0.23	-0.6
1,729,556	+		Synpcc7942_1659	0.27	-3.0
1,729,564	-		Synpcc7942_1659	0.28	+0.0
1,729,564	-		Synpcc7942_1659	0.28	-2.2
1,729,564	-		Synpcc7942_1659	0.28	+1.0
1,729,564	-		Synpcc7942_1659	0.28	+0.2
1,729,589	+		Synpcc7942_1659	0.32	-1.3
1,729,589	+		Synpcc7942_1659	0.32	-0.2
1,729,589	+		Synpcc7942_1659	0.32	+1.0
1,729,589	+		Synpcc7942_1659	0.32	-0.9
1,729,597	-		Synpcc7942_1659	0.33	+1.2
1,729,597	-		Synpcc7942_1659	0.33	+0.0
1,729,597	-		Synpcc7942_1659	0.33	-0.2
1,729,597	-		Synpcc7942_1659	0.33	-2.3
1,729,599	+		Synpcc7942_1659	0.33	+1.6
1,729,606	-		Synpcc7942_1659	0.34	+1.0
1,729,618	-		Synpcc7942_1659	0.36	-1.7
1,729,651	-		Synpcc7942_1659	0.41	+0.4
1,729,659	+		Synpcc7942_1659	0.42	-1.3
1,729,663	-		Synpcc7942_1659	0.43	-2.0