Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1089

Experiment: Biofilm Wash/Settlers in Fresh BG11R in Test Tubes with Spin rep 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Biofilm Wash/Settlers in Fresh BG11R in Test Tubes with Spin rep 1
1,104,192	-				+0.0
1,104,229	-				-0.6
1,104,229	-				-2.0
1,104,255	-	petE	Synpcc7942_1088	0.16	+1.0
1,104,292	+	petE	Synpcc7942_1088	0.26	-0.6
1,104,300	-	petE	Synpcc7942_1088	0.28	+2.0
1,104,330	-	petE	Synpcc7942_1088	0.36	-0.2
1,104,378	-				+0.4
1,104,421	+	petE	Synpcc7942_1088	0.60	-0.2
1,104,429	-	petE	Synpcc7942_1088	0.62	-0.2
1,104,504	+	petE	Synpcc7942_1088	0.82	+2.0
1,104,512	-	petE	Synpcc7942_1088	0.84	+0.0
1,104,536	+				+0.4
1,104,583	+				+1.5
1,104,606	+				+0.7
1,104,612	+				+2.0
1,104,612	-				-0.3
1,104,617	+				+0.0
1,104,617	-				+0.2
1,104,675	+				+0.0
1,104,683	-				+0.4
1,104,735	+				+0.0
1,104,834	+				-2.0
1,104,847	-				-2.1
1,104,867	+				-0.6
1,104,911	-				-0.6
1,104,935	-				-0.2
1,105,047	-	clpB	Synpcc7942_1089	0.13	+0.0
1,105,072	-	clpB	Synpcc7942_1089	0.14	-1.3
1,105,084	-	clpB	Synpcc7942_1089	0.14	+1.0
1,105,179	+	clpB	Synpcc7942_1089	0.18	-0.6
1,105,363	+	clpB	Synpcc7942_1089	0.25	-1.8
1,105,370	-	clpB	Synpcc7942_1089	0.25	+0.0
1,105,403	-	clpB	Synpcc7942_1089	0.26	+0.0
1,105,516	+	clpB	Synpcc7942_1089	0.30	+1.0
1,105,569	+	clpB	Synpcc7942_1089	0.32	-0.3
1,105,579	+	clpB	Synpcc7942_1089	0.33	-0.1
1,105,591	+	clpB	Synpcc7942_1089	0.33	-0.6
1,105,607	+	clpB	Synpcc7942_1089	0.34	-1.3
1,105,613	+	clpB	Synpcc7942_1089	0.34	-1.3
1,105,671	+	clpB	Synpcc7942_1089	0.36	+1.0
1,105,671	+	clpB	Synpcc7942_1089	0.36	-0.6
1,105,671	+	clpB	Synpcc7942_1089	0.36	+1.8
1,105,671	+	clpB	Synpcc7942_1089	0.36	-1.8
1,105,748	-	clpB	Synpcc7942_1089	0.39	+0.0
1,105,762	+	clpB	Synpcc7942_1089	0.40	+1.0
1,105,762	+	clpB	Synpcc7942_1089	0.40	-1.6
1,105,764	+	clpB	Synpcc7942_1089	0.40	+0.0
1,105,770	-	clpB	Synpcc7942_1089	0.40	-2.7
1,105,797	+	clpB	Synpcc7942_1089	0.41	+1.0
1,105,805	-	clpB	Synpcc7942_1089	0.41	+1.0
1,105,805	-	clpB	Synpcc7942_1089	0.41	-1.0
1,105,885	-	clpB	Synpcc7942_1089	0.44	-0.6
1,106,068	-	clpB	Synpcc7942_1089	0.51	+0.0
1,106,121	+	clpB	Synpcc7942_1089	0.53	+1.0
1,106,169	+	clpB	Synpcc7942_1089	0.55	+0.3
1,106,227	+	clpB	Synpcc7942_1089	0.57	+1.0
1,106,227	+	clpB	Synpcc7942_1089	0.57	+0.4
1,106,235	-	clpB	Synpcc7942_1089	0.58	+1.0
1,106,291	-	clpB	Synpcc7942_1089	0.60	-0.6
1,106,309	+	clpB	Synpcc7942_1089	0.60	-2.0
1,106,333	-	clpB	Synpcc7942_1089	0.61	-0.6
1,106,420	-	clpB	Synpcc7942_1089	0.64	-2.8
1,106,571	+	clpB	Synpcc7942_1089	0.70	+0.4
1,106,579	-	clpB	Synpcc7942_1089	0.70	-0.6
1,106,581	+	clpB	Synpcc7942_1089	0.71	+0.0
1,106,655	+	clpB	Synpcc7942_1089	0.73	-1.5
1,106,702	+	clpB	Synpcc7942_1089	0.75	-1.0
1,106,740	+	clpB	Synpcc7942_1089	0.77	-1.0
1,106,810	-	clpB	Synpcc7942_1089	0.79	+0.0
1,106,865	+	clpB	Synpcc7942_1089	0.81	-1.1
1,106,878	-	clpB	Synpcc7942_1089	0.82	-2.0
1,106,945	+	clpB	Synpcc7942_1089	0.84	+0.3
1,107,144	+				+0.0
1,107,144	+				-2.0
1,107,187	+				-0.6
1,107,274	-				-2.4
1,107,295	-				-2.1
1,107,358	-				+1.0
1,107,376	-				-1.5
1,107,383	+				-0.8
1,107,430	+				-0.4
1,107,552	-				-1.4
1,107,562	+		Synpcc7942_1090	0.11	-1.6
1,107,562	+		Synpcc7942_1090	0.11	-1.1
1,107,581	+		Synpcc7942_1090	0.13	+2.1
1,107,629	+		Synpcc7942_1090	0.19	+0.4
1,107,651	+		Synpcc7942_1090	0.22	+0.4
1,107,651	+		Synpcc7942_1090	0.22	-1.0
1,107,659	-		Synpcc7942_1090	0.23	-0.6
1,107,659	-		Synpcc7942_1090	0.23	-0.6
1,107,659	-		Synpcc7942_1090	0.23	+0.6
1,107,659	-		Synpcc7942_1090	0.23	+1.4
1,107,685	+		Synpcc7942_1090	0.26	+0.0
1,107,733	+		Synpcc7942_1090	0.32	+0.0
1,107,784	-		Synpcc7942_1090	0.38	+0.0
1,107,789	-		Synpcc7942_1090	0.39	-2.0
1,107,793	+		Synpcc7942_1090	0.40	-0.6
1,107,800	-		Synpcc7942_1090	0.40	+1.5
1,107,807	+		Synpcc7942_1090	0.41	+1.0
1,107,851	-		Synpcc7942_1090	0.47	+0.4
1,107,851	-		Synpcc7942_1090	0.47	-1.0
1,107,867	+		Synpcc7942_1090	0.49	+1.0
1,107,867	+		Synpcc7942_1090	0.49	+0.3
1,107,875	-		Synpcc7942_1090	0.50	-1.4
1,107,888	+		Synpcc7942_1090	0.52	+1.0
1,107,899	+		Synpcc7942_1090	0.53	-3.1
1,107,938	-		Synpcc7942_1090	0.58	+0.0
1,107,949	-		Synpcc7942_1090	0.59	+1.0
1,107,957	+		Synpcc7942_1090	0.60	-1.3
1,107,966	+		Synpcc7942_1090	0.61	-0.8
1,107,971	+		Synpcc7942_1090	0.62	-1.3
1,107,973	+		Synpcc7942_1090	0.62	+0.6
1,107,979	-		Synpcc7942_1090	0.63	+1.4
1,107,989	-		Synpcc7942_1090	0.64	+1.0
1,108,022	+		Synpcc7942_1090	0.68	+1.0
1,108,028	+		Synpcc7942_1090	0.69	+1.0
1,108,030	-		Synpcc7942_1090	0.69	+1.0
1,108,031	-		Synpcc7942_1090	0.69	-1.0
1,108,036	-		Synpcc7942_1090	0.70	-0.3
1,108,060	+		Synpcc7942_1090	0.73	+0.0
1,108,097	+		Synpcc7942_1090	0.78	+1.0
1,108,109	+		Synpcc7942_1090	0.79	-1.0
1,108,115	+		Synpcc7942_1090	0.80	+1.0
1,108,157	+		Synpcc7942_1090	0.85	+1.0
1,108,210	+				-1.9
1,108,232	-				-1.3
1,108,243	+				+1.0
1,108,248	+				+2.0
1,108,256	-				+0.7
1,108,302	+				-3.3