Experiment: Biofilm Wash/Settlers in Fresh BG11R in Test Tubes with Spin rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0981 and Synpcc7942_0982 are separated by 58 nucleotides Synpcc7942_0982 and deoC are separated by 19 nucleotides deoC and recO overlap by 4 nucleotides
Synpcc7942_0981: Synpcc7942_0981 - hypothetical protein, at 989,800 to 991,494
_0981
Synpcc7942_0982: Synpcc7942_0982 - hypothetical protein, at 991,553 to 992,167
_0982
Synpcc7942_0983: deoC - deoxyribose-phosphate aldolase, at 992,187 to 992,873
deoC
Synpcc7942_0984: recO - DNA repair protein RecO, at 992,870 to 993,670
recO
Position (kb) 991
992
993 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 990.583 kb on - strand, within Synpcc7942_0981 at 990.630 kb on + strand, within Synpcc7942_0981 at 990.632 kb on + strand, within Synpcc7942_0981 at 990.632 kb on + strand, within Synpcc7942_0981 at 990.684 kb on + strand, within Synpcc7942_0981 at 990.692 kb on + strand, within Synpcc7942_0981 at 990.697 kb on + strand, within Synpcc7942_0981 at 990.759 kb on - strand, within Synpcc7942_0981 at 990.766 kb on - strand, within Synpcc7942_0981 at 990.782 kb on + strand, within Synpcc7942_0981 at 990.819 kb on + strand, within Synpcc7942_0981 at 990.830 kb on - strand, within Synpcc7942_0981 at 990.856 kb on + strand, within Synpcc7942_0981 at 990.864 kb on - strand, within Synpcc7942_0981 at 990.874 kb on + strand at 990.899 kb on - strand, within Synpcc7942_0981 at 990.914 kb on + strand, within Synpcc7942_0981 at 990.914 kb on + strand, within Synpcc7942_0981 at 990.914 kb on + strand, within Synpcc7942_0981 at 990.922 kb on - strand, within Synpcc7942_0981 at 990.922 kb on - strand, within Synpcc7942_0981 at 990.922 kb on - strand, within Synpcc7942_0981 at 990.922 kb on - strand, within Synpcc7942_0981 at 990.922 kb on - strand, within Synpcc7942_0981 at 990.922 kb on - strand, within Synpcc7942_0981 at 990.930 kb on + strand, within Synpcc7942_0981 at 990.967 kb on - strand, within Synpcc7942_0981 at 990.967 kb on - strand, within Synpcc7942_0981 at 990.978 kb on - strand, within Synpcc7942_0981 at 991.001 kb on - strand, within Synpcc7942_0981 at 991.022 kb on - strand, within Synpcc7942_0981 at 991.027 kb on + strand, within Synpcc7942_0981 at 991.037 kb on + strand, within Synpcc7942_0981 at 991.105 kb on - strand, within Synpcc7942_0981 at 991.181 kb on - strand, within Synpcc7942_0981 at 991.212 kb on - strand, within Synpcc7942_0981 at 991.236 kb on + strand, within Synpcc7942_0981 at 991.244 kb on - strand, within Synpcc7942_0981 at 991.249 kb on + strand, within Synpcc7942_0981 at 991.318 kb on + strand, within Synpcc7942_0981 at 991.341 kb on - strand at 991.348 kb on - strand at 991.348 kb on - strand at 991.350 kb on - strand at 991.350 kb on - strand at 991.420 kb on - strand at 991.432 kb on + strand at 991.432 kb on + strand at 991.440 kb on - strand at 991.465 kb on - strand at 991.478 kb on + strand at 991.478 kb on + strand at 991.499 kb on + strand at 991.499 kb on + strand at 991.499 kb on + strand at 991.507 kb on - strand at 991.509 kb on + strand at 991.526 kb on + strand at 991.534 kb on - strand at 991.536 kb on - strand at 991.544 kb on - strand at 991.548 kb on + strand at 991.548 kb on + strand at 991.554 kb on - strand at 991.555 kb on + strand at 991.556 kb on - strand at 991.556 kb on - strand at 991.567 kb on + strand at 991.580 kb on + strand at 991.584 kb on + strand at 991.657 kb on + strand, within Synpcc7942_0982 at 991.660 kb on - strand, within Synpcc7942_0982 at 991.660 kb on - strand, within Synpcc7942_0982 at 991.684 kb on - strand, within Synpcc7942_0982 at 991.693 kb on + strand, within Synpcc7942_0982 at 991.706 kb on - strand, within Synpcc7942_0982 at 991.706 kb on - strand, within Synpcc7942_0982 at 991.706 kb on - strand, within Synpcc7942_0982 at 991.778 kb on + strand, within Synpcc7942_0982 at 991.786 kb on - strand, within Synpcc7942_0982 at 991.806 kb on - strand, within Synpcc7942_0982 at 991.904 kb on - strand, within Synpcc7942_0982 at 991.927 kb on - strand, within Synpcc7942_0982 at 991.931 kb on + strand, within Synpcc7942_0982 at 992.183 kb on + strand at 992.183 kb on + strand at 992.183 kb on + strand at 992.183 kb on + strand at 992.191 kb on - strand at 992.213 kb on - strand at 992.219 kb on + strand at 992.257 kb on + strand, within deoC at 992.265 kb on - strand, within deoC at 992.320 kb on - strand, within deoC at 992.325 kb on - strand, within deoC at 992.343 kb on - strand, within deoC at 992.353 kb on + strand, within deoC at 992.368 kb on + strand, within deoC at 992.370 kb on + strand, within deoC at 992.376 kb on - strand, within deoC at 992.426 kb on + strand, within deoC at 992.426 kb on + strand, within deoC at 992.426 kb on + strand, within deoC at 992.434 kb on - strand, within deoC at 992.434 kb on - strand, within deoC at 992.434 kb on - strand, within deoC at 992.434 kb on - strand, within deoC at 992.434 kb on - strand, within deoC at 992.434 kb on - strand, within deoC at 992.468 kb on + strand, within deoC at 992.492 kb on - strand, within deoC at 992.492 kb on - strand, within deoC at 992.514 kb on + strand, within deoC at 992.517 kb on - strand, within deoC at 992.518 kb on - strand, within deoC at 992.523 kb on + strand, within deoC at 992.557 kb on - strand, within deoC at 992.557 kb on - strand, within deoC at 992.562 kb on + strand, within deoC at 992.613 kb on - strand, within deoC at 992.624 kb on + strand, within deoC at 992.629 kb on + strand, within deoC at 992.631 kb on - strand, within deoC at 992.637 kb on - strand, within deoC at 992.657 kb on + strand, within deoC at 992.660 kb on - strand, within deoC at 992.665 kb on - strand, within deoC at 992.665 kb on - strand, within deoC at 992.665 kb on - strand, within deoC at 992.665 kb on - strand, within deoC at 992.685 kb on + strand, within deoC at 992.693 kb on - strand, within deoC at 992.718 kb on + strand, within deoC at 992.765 kb on + strand, within deoC at 992.786 kb on - strand, within deoC at 992.796 kb on + strand, within deoC at 992.809 kb on + strand at 992.829 kb on - strand at 992.840 kb on + strand at 992.842 kb on - strand at 992.849 kb on - strand at 992.859 kb on - strand at 992.859 kb on - strand at 992.867 kb on + strand at 992.875 kb on - strand at 992.878 kb on + strand at 992.886 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm Wash/Settlers in Fresh BG11R in Test Tubes with Spin rep 1 remove 990,583 - Synpcc7942_0981 0.46 -0.3 990,630 + Synpcc7942_0981 0.49 +1.0 990,632 + Synpcc7942_0981 0.49 -1.0 990,632 + Synpcc7942_0981 0.49 -0.6 990,684 + Synpcc7942_0981 0.52 +1.0 990,692 + Synpcc7942_0981 0.53 +1.0 990,697 + Synpcc7942_0981 0.53 -1.6 990,759 - Synpcc7942_0981 0.57 -1.3 990,766 - Synpcc7942_0981 0.57 +1.0 990,782 + Synpcc7942_0981 0.58 +0.0 990,819 + Synpcc7942_0981 0.60 -1.6 990,830 - Synpcc7942_0981 0.61 +1.0 990,856 + Synpcc7942_0981 0.62 -1.8 990,864 - Synpcc7942_0981 0.63 -1.6 990,874 + +0.0 990,899 - Synpcc7942_0981 0.65 -2.1 990,914 + Synpcc7942_0981 0.66 -1.4 990,914 + Synpcc7942_0981 0.66 +0.0 990,914 + Synpcc7942_0981 0.66 +0.0 990,922 - Synpcc7942_0981 0.66 -0.6 990,922 - Synpcc7942_0981 0.66 +0.0 990,922 - Synpcc7942_0981 0.66 +1.0 990,922 - Synpcc7942_0981 0.66 +0.3 990,922 - Synpcc7942_0981 0.66 +1.0 990,922 - Synpcc7942_0981 0.66 -2.3 990,930 + Synpcc7942_0981 0.67 -0.2 990,967 - Synpcc7942_0981 0.69 +1.0 990,967 - Synpcc7942_0981 0.69 -4.0 990,978 - Synpcc7942_0981 0.69 -2.3 991,001 - Synpcc7942_0981 0.71 +1.0 991,022 - Synpcc7942_0981 0.72 +1.0 991,027 + Synpcc7942_0981 0.72 -2.0 991,037 + Synpcc7942_0981 0.73 +0.0 991,105 - Synpcc7942_0981 0.77 +1.0 991,181 - Synpcc7942_0981 0.81 +2.0 991,212 - Synpcc7942_0981 0.83 -0.6 991,236 + Synpcc7942_0981 0.85 +1.0 991,244 - Synpcc7942_0981 0.85 -1.3 991,249 + Synpcc7942_0981 0.85 +0.6 991,318 + Synpcc7942_0981 0.90 -0.6 991,341 - +1.0 991,348 - +2.0 991,348 - -1.3 991,350 - -2.7 991,350 - -0.6 991,420 - -1.0 991,432 + +0.0 991,432 + +0.4 991,440 - +0.0 991,465 - -2.4 991,478 + +0.0 991,478 + -0.4 991,499 + -1.5 991,499 + +1.0 991,499 + -1.1 991,507 - +1.0 991,509 + +1.0 991,526 + +1.0 991,534 - +1.0 991,536 - -0.6 991,544 - -1.0 991,548 + -2.6 991,548 + +0.0 991,554 - +0.8 991,555 + -2.6 991,556 - +1.0 991,556 - +0.0 991,567 + -1.3 991,580 + -2.0 991,584 + -0.3 991,657 + Synpcc7942_0982 0.17 -2.4 991,660 - Synpcc7942_0982 0.17 +0.6 991,660 - Synpcc7942_0982 0.17 +1.0 991,684 - Synpcc7942_0982 0.21 -1.1 991,693 + Synpcc7942_0982 0.23 +1.0 991,706 - Synpcc7942_0982 0.25 +1.0 991,706 - Synpcc7942_0982 0.25 +1.0 991,706 - Synpcc7942_0982 0.25 -1.1 991,778 + Synpcc7942_0982 0.37 -2.1 991,786 - Synpcc7942_0982 0.38 +0.0 991,806 - Synpcc7942_0982 0.41 +0.0 991,904 - Synpcc7942_0982 0.57 +1.0 991,927 - Synpcc7942_0982 0.61 -1.6 991,931 + Synpcc7942_0982 0.61 +1.0 992,183 + -1.8 992,183 + -1.3 992,183 + +1.8 992,183 + +1.4 992,191 - -1.1 992,213 - -0.7 992,219 + -1.0 992,257 + deoC Synpcc7942_0983 0.10 -2.9 992,265 - deoC Synpcc7942_0983 0.11 -1.4 992,320 - deoC Synpcc7942_0983 0.19 +1.4 992,325 - deoC Synpcc7942_0983 0.20 +0.4 992,343 - deoC Synpcc7942_0983 0.23 +0.1 992,353 + deoC Synpcc7942_0983 0.24 -0.2 992,368 + deoC Synpcc7942_0983 0.26 -1.7 992,370 + deoC Synpcc7942_0983 0.27 -2.3 992,376 - deoC Synpcc7942_0983 0.28 +0.6 992,426 + deoC Synpcc7942_0983 0.35 +0.5 992,426 + deoC Synpcc7942_0983 0.35 -1.2 992,426 + deoC Synpcc7942_0983 0.35 -1.4 992,434 - deoC Synpcc7942_0983 0.36 -1.2 992,434 - deoC Synpcc7942_0983 0.36 +1.8 992,434 - deoC Synpcc7942_0983 0.36 -1.4 992,434 - deoC Synpcc7942_0983 0.36 +0.1 992,434 - deoC Synpcc7942_0983 0.36 -1.2 992,434 - deoC Synpcc7942_0983 0.36 -0.8 992,468 + deoC Synpcc7942_0983 0.41 -1.2 992,492 - deoC Synpcc7942_0983 0.44 -0.3 992,492 - deoC Synpcc7942_0983 0.44 -1.9 992,514 + deoC Synpcc7942_0983 0.48 -0.6 992,517 - deoC Synpcc7942_0983 0.48 +0.9 992,518 - deoC Synpcc7942_0983 0.48 +0.4 992,523 + deoC Synpcc7942_0983 0.49 +0.4 992,557 - deoC Synpcc7942_0983 0.54 -0.6 992,557 - deoC Synpcc7942_0983 0.54 +0.9 992,562 + deoC Synpcc7942_0983 0.55 -0.4 992,613 - deoC Synpcc7942_0983 0.62 -1.0 992,624 + deoC Synpcc7942_0983 0.64 -0.2 992,629 + deoC Synpcc7942_0983 0.64 -1.0 992,631 - deoC Synpcc7942_0983 0.65 +1.1 992,637 - deoC Synpcc7942_0983 0.66 -1.1 992,657 + deoC Synpcc7942_0983 0.68 -1.4 992,660 - deoC Synpcc7942_0983 0.69 +1.0 992,665 - deoC Synpcc7942_0983 0.70 -0.3 992,665 - deoC Synpcc7942_0983 0.70 -1.8 992,665 - deoC Synpcc7942_0983 0.70 -0.2 992,665 - deoC Synpcc7942_0983 0.70 -0.4 992,685 + deoC Synpcc7942_0983 0.72 +1.0 992,693 - deoC Synpcc7942_0983 0.74 -1.1 992,718 + deoC Synpcc7942_0983 0.77 -2.2 992,765 + deoC Synpcc7942_0983 0.84 -2.2 992,786 - deoC Synpcc7942_0983 0.87 -1.0 992,796 + deoC Synpcc7942_0983 0.89 +0.0 992,809 + +1.8 992,829 - -0.4 992,840 + -0.6 992,842 - +0.7 992,849 - -1.1 992,859 - +1.0 992,859 - -1.9 992,867 + +2.4 992,875 - +0.4 992,878 + -1.3 992,886 - -0.8
Or see this region's nucleotide sequence