Experiment: Biofilm Wash/Settlers in Fresh BG11R in Test Tubes with Spin rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0938 and cysC are separated by 77 nucleotides cysC and Synpcc7942_0940 are separated by 44 nucleotides Synpcc7942_0940 and Synpcc7942_0941 are separated by 424 nucleotides
Synpcc7942_0938: Synpcc7942_0938 - transcriptional regulator, ArsR family, at 944,220 to 944,540
_0938
Synpcc7942_0939: cysC - adenylylsulfate kinase, at 944,618 to 945,244
cysC
Synpcc7942_0940: Synpcc7942_0940 - transcriptional regulator, XRE family, at 945,289 to 945,639
_0940
Synpcc7942_0941: Synpcc7942_0941 - ATPase, at 946,064 to 947,773
_0941
Position (kb) 945
946 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 944.289 kb on + strand, within Synpcc7942_0938 at 944.291 kb on + strand, within Synpcc7942_0938 at 944.299 kb on - strand, within Synpcc7942_0938 at 944.307 kb on - strand, within Synpcc7942_0938 at 944.311 kb on - strand, within Synpcc7942_0938 at 944.346 kb on + strand, within Synpcc7942_0938 at 944.354 kb on - strand, within Synpcc7942_0938 at 944.354 kb on - strand, within Synpcc7942_0938 at 944.357 kb on + strand, within Synpcc7942_0938 at 944.357 kb on + strand, within Synpcc7942_0938 at 944.365 kb on - strand, within Synpcc7942_0938 at 944.365 kb on - strand, within Synpcc7942_0938 at 944.365 kb on - strand, within Synpcc7942_0938 at 944.373 kb on - strand, within Synpcc7942_0938 at 944.374 kb on + strand, within Synpcc7942_0938 at 944.382 kb on + strand, within Synpcc7942_0938 at 944.383 kb on - strand, within Synpcc7942_0938 at 944.423 kb on - strand, within Synpcc7942_0938 at 944.433 kb on - strand, within Synpcc7942_0938 at 944.457 kb on + strand, within Synpcc7942_0938 at 944.466 kb on - strand, within Synpcc7942_0938 at 944.466 kb on - strand, within Synpcc7942_0938 at 944.468 kb on + strand, within Synpcc7942_0938 at 944.480 kb on - strand, within Synpcc7942_0938 at 944.511 kb on + strand at 944.546 kb on + strand at 944.561 kb on - strand at 944.581 kb on + strand at 944.581 kb on + strand at 944.581 kb on + strand at 944.591 kb on + strand at 944.593 kb on - strand at 945.191 kb on + strand at 945.199 kb on + strand at 945.199 kb on + strand at 945.201 kb on + strand at 945.270 kb on - strand at 945.285 kb on - strand at 945.285 kb on - strand at 945.290 kb on - strand at 945.323 kb on + strand at 945.323 kb on + strand at 945.340 kb on + strand, within Synpcc7942_0940 at 945.343 kb on + strand, within Synpcc7942_0940 at 945.358 kb on + strand, within Synpcc7942_0940 at 945.365 kb on + strand, within Synpcc7942_0940 at 945.377 kb on + strand, within Synpcc7942_0940 at 945.385 kb on - strand, within Synpcc7942_0940 at 945.390 kb on - strand, within Synpcc7942_0940 at 945.512 kb on + strand, within Synpcc7942_0940 at 945.684 kb on + strand at 945.707 kb on - strand at 945.758 kb on - strand at 945.758 kb on - strand at 945.760 kb on + strand at 945.760 kb on + strand at 945.768 kb on - strand at 945.794 kb on + strand at 945.812 kb on - strand at 945.812 kb on - strand at 945.835 kb on - strand at 945.874 kb on + strand at 945.887 kb on + strand at 945.904 kb on - strand at 945.920 kb on + strand at 946.006 kb on + strand at 946.062 kb on + strand at 946.070 kb on - strand at 946.070 kb on - strand at 946.070 kb on - strand at 946.070 kb on - strand at 946.070 kb on - strand at 946.070 kb on - strand at 946.143 kb on + strand at 946.310 kb on - strand, within Synpcc7942_0941 at 946.465 kb on - strand, within Synpcc7942_0941 at 946.490 kb on + strand, within Synpcc7942_0941 at 946.507 kb on + strand, within Synpcc7942_0941 at 946.612 kb on - strand, within Synpcc7942_0941 at 946.615 kb on + strand, within Synpcc7942_0941
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm Wash/Settlers in Fresh BG11R in Test Tubes with Spin rep 1 remove 944,289 + Synpcc7942_0938 0.21 -0.8 944,291 + Synpcc7942_0938 0.22 +1.0 944,299 - Synpcc7942_0938 0.25 -0.3 944,307 - Synpcc7942_0938 0.27 -0.6 944,311 - Synpcc7942_0938 0.28 +0.3 944,346 + Synpcc7942_0938 0.39 +0.0 944,354 - Synpcc7942_0938 0.42 +0.4 944,354 - Synpcc7942_0938 0.42 -1.6 944,357 + Synpcc7942_0938 0.43 -3.1 944,357 + Synpcc7942_0938 0.43 +1.8 944,365 - Synpcc7942_0938 0.45 +1.0 944,365 - Synpcc7942_0938 0.45 -0.6 944,365 - Synpcc7942_0938 0.45 +1.0 944,373 - Synpcc7942_0938 0.48 -0.4 944,374 + Synpcc7942_0938 0.48 -0.9 944,382 + Synpcc7942_0938 0.50 -1.8 944,383 - Synpcc7942_0938 0.51 -2.3 944,423 - Synpcc7942_0938 0.63 -2.4 944,433 - Synpcc7942_0938 0.66 +1.0 944,457 + Synpcc7942_0938 0.74 -1.7 944,466 - Synpcc7942_0938 0.77 +1.0 944,466 - Synpcc7942_0938 0.77 -1.6 944,468 + Synpcc7942_0938 0.77 -1.2 944,480 - Synpcc7942_0938 0.81 +1.0 944,511 + +0.4 944,546 + -2.7 944,561 - -1.1 944,581 + -0.6 944,581 + +1.0 944,581 + +1.0 944,591 + -0.4 944,593 - -1.2 945,191 + +1.0 945,199 + +1.6 945,199 + +1.0 945,201 + -0.8 945,270 - +1.0 945,285 - -1.8 945,285 - -0.7 945,290 - +1.4 945,323 + -1.4 945,323 + -0.6 945,340 + Synpcc7942_0940 0.15 -0.8 945,343 + Synpcc7942_0940 0.15 -0.3 945,358 + Synpcc7942_0940 0.20 -1.2 945,365 + Synpcc7942_0940 0.22 -1.6 945,377 + Synpcc7942_0940 0.25 -1.5 945,385 - Synpcc7942_0940 0.27 -0.7 945,390 - Synpcc7942_0940 0.29 +0.0 945,512 + Synpcc7942_0940 0.64 -0.9 945,684 + -2.0 945,707 - -1.2 945,758 - +0.5 945,758 - +0.3 945,760 + +0.0 945,760 + +1.0 945,768 - +0.2 945,794 + +1.0 945,812 - -0.8 945,812 - -0.1 945,835 - +2.0 945,874 + -0.6 945,887 + -1.1 945,904 - -0.9 945,920 + -0.6 946,006 + -1.0 946,062 + -1.4 946,070 - -0.4 946,070 - -0.5 946,070 - +0.0 946,070 - -0.7 946,070 - +1.0 946,070 - -1.3 946,143 + +1.0 946,310 - Synpcc7942_0941 0.14 +1.5 946,465 - Synpcc7942_0941 0.23 -2.9 946,490 + Synpcc7942_0941 0.25 +1.0 946,507 + Synpcc7942_0941 0.26 -1.0 946,612 - Synpcc7942_0941 0.32 -0.3 946,615 + Synpcc7942_0941 0.32 -0.4
Or see this region's nucleotide sequence