Experiment: Biofilm Wash/Settlers in Fresh BG11R in Test Tubes with Spin rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0772 and ycf52 are separated by 14 nucleotides ycf52 and Synpcc7942_0774 are separated by 18 nucleotides Synpcc7942_0774 and Synpcc7942_0775 are separated by 138 nucleotides Synpcc7942_0775 and crtE overlap by 1 nucleotides
Synpcc7942_0772: Synpcc7942_0772 - hypothetical protein, at 764,984 to 765,577
_0772
Synpcc7942_0773: ycf52 - conserved hypothetical protein YCF52, at 765,592 to 766,197
ycf52
Synpcc7942_0774: Synpcc7942_0774 - esterase, at 766,216 to 767,103
_0774
Synpcc7942_0775: Synpcc7942_0775 - hypothetical protein, at 767,242 to 767,721
_0775
Synpcc7942_0776: crtE - farnesyl-diphosphate synthase, at 767,721 to 768,626
crtE
Position (kb) 766
767
768 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 765.295 kb on + strand, within Synpcc7942_0772 at 765.308 kb on - strand, within Synpcc7942_0772 at 765.310 kb on - strand, within Synpcc7942_0772 at 765.338 kb on - strand, within Synpcc7942_0772 at 765.338 kb on - strand, within Synpcc7942_0772 at 765.355 kb on - strand, within Synpcc7942_0772 at 765.377 kb on + strand, within Synpcc7942_0772 at 765.390 kb on + strand, within Synpcc7942_0772 at 765.390 kb on + strand, within Synpcc7942_0772 at 765.414 kb on + strand, within Synpcc7942_0772 at 765.420 kb on - strand, within Synpcc7942_0772 at 765.422 kb on - strand, within Synpcc7942_0772 at 765.424 kb on + strand, within Synpcc7942_0772 at 765.424 kb on + strand, within Synpcc7942_0772 at 765.424 kb on + strand, within Synpcc7942_0772 at 765.424 kb on + strand, within Synpcc7942_0772 at 765.424 kb on + strand, within Synpcc7942_0772 at 765.424 kb on + strand, within Synpcc7942_0772 at 765.424 kb on + strand, within Synpcc7942_0772 at 765.432 kb on - strand, within Synpcc7942_0772 at 765.432 kb on - strand, within Synpcc7942_0772 at 765.432 kb on - strand, within Synpcc7942_0772 at 765.432 kb on - strand, within Synpcc7942_0772 at 765.432 kb on - strand, within Synpcc7942_0772 at 765.432 kb on - strand, within Synpcc7942_0772 at 765.435 kb on + strand, within Synpcc7942_0772 at 765.436 kb on + strand, within Synpcc7942_0772 at 765.456 kb on + strand, within Synpcc7942_0772 at 765.464 kb on - strand, within Synpcc7942_0772 at 765.521 kb on + strand at 765.523 kb on - strand at 765.535 kb on + strand at 765.542 kb on + strand at 765.542 kb on + strand at 765.542 kb on + strand at 765.547 kb on + strand at 765.550 kb on - strand at 765.550 kb on - strand at 765.552 kb on + strand at 765.553 kb on - strand at 765.579 kb on - strand at 765.581 kb on - strand at 765.687 kb on + strand, within ycf52 at 765.701 kb on + strand, within ycf52 at 765.748 kb on + strand, within ycf52 at 765.762 kb on - strand, within ycf52 at 765.786 kb on - strand, within ycf52 at 765.813 kb on + strand, within ycf52 at 765.850 kb on + strand, within ycf52 at 765.856 kb on + strand, within ycf52 at 765.919 kb on + strand, within ycf52 at 765.952 kb on - strand, within ycf52 at 765.952 kb on - strand, within ycf52 at 766.014 kb on - strand, within ycf52 at 766.048 kb on - strand, within ycf52 at 766.085 kb on - strand, within ycf52 at 766.092 kb on - strand, within ycf52 at 766.100 kb on + strand, within ycf52 at 766.101 kb on - strand, within ycf52 at 766.113 kb on - strand, within ycf52 at 766.143 kb on - strand at 766.154 kb on + strand at 766.154 kb on + strand at 766.162 kb on - strand at 766.182 kb on - strand at 766.186 kb on - strand at 766.221 kb on - strand at 766.248 kb on - strand at 766.250 kb on + strand at 766.258 kb on - strand at 766.272 kb on - strand at 766.310 kb on + strand, within Synpcc7942_0774 at 766.322 kb on + strand, within Synpcc7942_0774 at 766.322 kb on + strand, within Synpcc7942_0774 at 766.339 kb on + strand, within Synpcc7942_0774 at 766.354 kb on - strand, within Synpcc7942_0774 at 766.375 kb on - strand, within Synpcc7942_0774 at 766.375 kb on - strand, within Synpcc7942_0774 at 766.379 kb on + strand, within Synpcc7942_0774 at 766.379 kb on + strand, within Synpcc7942_0774 at 766.379 kb on + strand, within Synpcc7942_0774 at 766.379 kb on + strand, within Synpcc7942_0774 at 766.387 kb on - strand, within Synpcc7942_0774 at 766.387 kb on - strand, within Synpcc7942_0774 at 766.402 kb on - strand, within Synpcc7942_0774 at 766.402 kb on - strand, within Synpcc7942_0774 at 766.415 kb on + strand, within Synpcc7942_0774 at 766.418 kb on - strand, within Synpcc7942_0774 at 766.423 kb on - strand, within Synpcc7942_0774 at 766.423 kb on - strand, within Synpcc7942_0774 at 766.436 kb on - strand, within Synpcc7942_0774 at 766.473 kb on - strand, within Synpcc7942_0774 at 766.482 kb on - strand, within Synpcc7942_0774 at 766.509 kb on + strand, within Synpcc7942_0774 at 766.523 kb on + strand, within Synpcc7942_0774 at 766.535 kb on + strand, within Synpcc7942_0774 at 766.535 kb on + strand, within Synpcc7942_0774 at 766.540 kb on + strand, within Synpcc7942_0774 at 766.543 kb on - strand, within Synpcc7942_0774 at 766.543 kb on - strand, within Synpcc7942_0774 at 766.545 kb on + strand, within Synpcc7942_0774 at 766.545 kb on + strand, within Synpcc7942_0774 at 766.545 kb on + strand, within Synpcc7942_0774 at 766.545 kb on + strand, within Synpcc7942_0774 at 766.545 kb on + strand, within Synpcc7942_0774 at 766.553 kb on - strand, within Synpcc7942_0774 at 766.553 kb on - strand, within Synpcc7942_0774 at 766.553 kb on - strand, within Synpcc7942_0774 at 766.553 kb on - strand, within Synpcc7942_0774 at 766.585 kb on - strand, within Synpcc7942_0774 at 766.604 kb on - strand at 766.631 kb on + strand, within Synpcc7942_0774 at 766.803 kb on + strand, within Synpcc7942_0774 at 766.806 kb on - strand, within Synpcc7942_0774 at 766.824 kb on + strand, within Synpcc7942_0774 at 766.903 kb on - strand at 766.921 kb on + strand, within Synpcc7942_0774 at 766.923 kb on - strand, within Synpcc7942_0774 at 766.972 kb on - strand, within Synpcc7942_0774 at 766.975 kb on + strand, within Synpcc7942_0774 at 766.983 kb on - strand, within Synpcc7942_0774 at 767.012 kb on + strand, within Synpcc7942_0774 at 767.032 kb on + strand at 767.065 kb on + strand at 767.068 kb on - strand at 767.073 kb on - strand at 767.073 kb on - strand at 767.097 kb on + strand at 767.105 kb on - strand at 767.107 kb on + strand at 767.128 kb on + strand at 767.155 kb on + strand at 767.202 kb on + strand at 767.210 kb on - strand at 767.210 kb on - strand at 767.215 kb on + strand at 767.218 kb on - strand at 767.221 kb on + strand at 767.223 kb on - strand at 767.255 kb on + strand at 767.273 kb on - strand at 767.278 kb on - strand at 767.718 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm Wash/Settlers in Fresh BG11R in Test Tubes with Spin rep 1 remove 765,295 + Synpcc7942_0772 0.52 +0.5 765,308 - Synpcc7942_0772 0.55 +0.6 765,310 - Synpcc7942_0772 0.55 -0.4 765,338 - Synpcc7942_0772 0.60 +2.2 765,338 - Synpcc7942_0772 0.60 -0.9 765,355 - Synpcc7942_0772 0.62 -0.8 765,377 + Synpcc7942_0772 0.66 -0.5 765,390 + Synpcc7942_0772 0.68 -0.7 765,390 + Synpcc7942_0772 0.68 -1.0 765,414 + Synpcc7942_0772 0.72 -1.3 765,420 - Synpcc7942_0772 0.73 +0.1 765,422 - Synpcc7942_0772 0.74 -0.6 765,424 + Synpcc7942_0772 0.74 -0.4 765,424 + Synpcc7942_0772 0.74 +0.3 765,424 + Synpcc7942_0772 0.74 -0.7 765,424 + Synpcc7942_0772 0.74 -3.2 765,424 + Synpcc7942_0772 0.74 -1.8 765,424 + Synpcc7942_0772 0.74 +1.6 765,424 + Synpcc7942_0772 0.74 -0.4 765,432 - Synpcc7942_0772 0.75 +1.6 765,432 - Synpcc7942_0772 0.75 +2.1 765,432 - Synpcc7942_0772 0.75 -1.6 765,432 - Synpcc7942_0772 0.75 +0.1 765,432 - Synpcc7942_0772 0.75 +2.0 765,432 - Synpcc7942_0772 0.75 -1.3 765,435 + Synpcc7942_0772 0.76 -0.2 765,436 + Synpcc7942_0772 0.76 -1.3 765,456 + Synpcc7942_0772 0.79 +1.0 765,464 - Synpcc7942_0772 0.81 +1.6 765,521 + -0.5 765,523 - -0.6 765,535 + -0.9 765,542 + -0.6 765,542 + -0.2 765,542 + +1.4 765,547 + -1.0 765,550 - +0.4 765,550 - -1.4 765,552 + -0.3 765,553 - +0.4 765,579 - -0.5 765,581 - -0.7 765,687 + ycf52 Synpcc7942_0773 0.16 +1.0 765,701 + ycf52 Synpcc7942_0773 0.18 -0.6 765,748 + ycf52 Synpcc7942_0773 0.26 -0.7 765,762 - ycf52 Synpcc7942_0773 0.28 -0.4 765,786 - ycf52 Synpcc7942_0773 0.32 -0.1 765,813 + ycf52 Synpcc7942_0773 0.36 +1.0 765,850 + ycf52 Synpcc7942_0773 0.43 -0.1 765,856 + ycf52 Synpcc7942_0773 0.44 -1.2 765,919 + ycf52 Synpcc7942_0773 0.54 -2.2 765,952 - ycf52 Synpcc7942_0773 0.59 +0.2 765,952 - ycf52 Synpcc7942_0773 0.59 -0.5 766,014 - ycf52 Synpcc7942_0773 0.70 -0.8 766,048 - ycf52 Synpcc7942_0773 0.75 -0.6 766,085 - ycf52 Synpcc7942_0773 0.81 -0.5 766,092 - ycf52 Synpcc7942_0773 0.83 -0.4 766,100 + ycf52 Synpcc7942_0773 0.84 +1.0 766,101 - ycf52 Synpcc7942_0773 0.84 -1.0 766,113 - ycf52 Synpcc7942_0773 0.86 +1.7 766,143 - -0.6 766,154 + +0.1 766,154 + -0.6 766,162 - -0.2 766,182 - -0.2 766,186 - +2.0 766,221 - -2.1 766,248 - +1.0 766,250 + +1.0 766,258 - +1.0 766,272 - +0.1 766,310 + Synpcc7942_0774 0.11 +1.0 766,322 + Synpcc7942_0774 0.12 -1.0 766,322 + Synpcc7942_0774 0.12 -3.1 766,339 + Synpcc7942_0774 0.14 -0.3 766,354 - Synpcc7942_0774 0.16 -1.3 766,375 - Synpcc7942_0774 0.18 -2.6 766,375 - Synpcc7942_0774 0.18 -0.0 766,379 + Synpcc7942_0774 0.18 +2.0 766,379 + Synpcc7942_0774 0.18 -0.0 766,379 + Synpcc7942_0774 0.18 -0.3 766,379 + Synpcc7942_0774 0.18 -0.8 766,387 - Synpcc7942_0774 0.19 -1.3 766,387 - Synpcc7942_0774 0.19 -1.8 766,402 - Synpcc7942_0774 0.21 -1.3 766,402 - Synpcc7942_0774 0.21 +2.0 766,415 + Synpcc7942_0774 0.22 -0.0 766,418 - Synpcc7942_0774 0.23 +1.0 766,423 - Synpcc7942_0774 0.23 -0.0 766,423 - Synpcc7942_0774 0.23 +0.3 766,436 - Synpcc7942_0774 0.25 +0.4 766,473 - Synpcc7942_0774 0.29 -1.5 766,482 - Synpcc7942_0774 0.30 -1.0 766,509 + Synpcc7942_0774 0.33 +1.0 766,523 + Synpcc7942_0774 0.35 -2.3 766,535 + Synpcc7942_0774 0.36 -0.0 766,535 + Synpcc7942_0774 0.36 -1.8 766,540 + Synpcc7942_0774 0.36 +1.0 766,543 - Synpcc7942_0774 0.37 -0.0 766,543 - Synpcc7942_0774 0.37 -1.3 766,545 + Synpcc7942_0774 0.37 +1.6 766,545 + Synpcc7942_0774 0.37 -1.3 766,545 + Synpcc7942_0774 0.37 -1.4 766,545 + Synpcc7942_0774 0.37 -2.0 766,545 + Synpcc7942_0774 0.37 -1.0 766,553 - Synpcc7942_0774 0.38 +0.4 766,553 - Synpcc7942_0774 0.38 +1.0 766,553 - Synpcc7942_0774 0.38 -2.6 766,553 - Synpcc7942_0774 0.38 -2.2 766,585 - Synpcc7942_0774 0.42 +0.3 766,604 - -1.3 766,631 + Synpcc7942_0774 0.47 -0.0 766,803 + Synpcc7942_0774 0.66 -1.6 766,806 - Synpcc7942_0774 0.66 -1.7 766,824 + Synpcc7942_0774 0.68 -0.0 766,903 - +1.0 766,921 + Synpcc7942_0774 0.79 +1.0 766,923 - Synpcc7942_0774 0.80 +1.0 766,972 - Synpcc7942_0774 0.85 -2.8 766,975 + Synpcc7942_0774 0.85 +1.4 766,983 - Synpcc7942_0774 0.86 -0.6 767,012 + Synpcc7942_0774 0.90 -0.0 767,032 + +2.0 767,065 + -0.7 767,068 - -0.3 767,073 - -1.5 767,073 - -0.8 767,097 + -2.0 767,105 - +0.2 767,107 + -0.5 767,128 + +1.0 767,155 + +2.0 767,202 + -1.1 767,210 - +1.0 767,210 - +0.4 767,215 + -0.4 767,218 - +0.2 767,221 + +1.6 767,223 - -0.2 767,255 + -3.7 767,273 - -0.0 767,278 - -0.8 767,718 + -2.1
Or see this region's nucleotide sequence