Experiment: Biofilm Wash/Settlers in Fresh BG11R in Test Tubes with Spin rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0759 and Synpcc7942_0760 are separated by 9 nucleotides Synpcc7942_0760 and Synpcc7942_0761 are separated by 225 nucleotides Synpcc7942_0761 and Synpcc7942_0762 are separated by 502 nucleotides
Synpcc7942_0759: Synpcc7942_0759 - hypothetical protein, at 752,574 to 753,953
_0759
Synpcc7942_0760: Synpcc7942_0760 - hypothetical protein, at 753,963 to 754,553
_0760
Synpcc7942_0761: Synpcc7942_0761 - hypothetical protein, at 754,779 to 755,507
_0761
Synpcc7942_0762: Synpcc7942_0762 - hypothetical protein, at 756,010 to 756,561
_0762
Position (kb) 754
755
756 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 753.993 kb on - strand at 754.011 kb on - strand at 754.076 kb on + strand, within Synpcc7942_0760 at 754.418 kb on - strand, within Synpcc7942_0760 at 754.768 kb on - strand at 754.831 kb on + strand at 754.831 kb on + strand at 754.831 kb on - strand at 754.839 kb on - strand at 754.869 kb on + strand, within Synpcc7942_0761 at 754.871 kb on + strand, within Synpcc7942_0761 at 754.894 kb on + strand, within Synpcc7942_0761 at 754.894 kb on + strand, within Synpcc7942_0761 at 755.332 kb on + strand, within Synpcc7942_0761 at 755.345 kb on + strand, within Synpcc7942_0761 at 755.380 kb on - strand, within Synpcc7942_0761 at 755.695 kb on - strand at 755.757 kb on + strand at 755.788 kb on - strand at 755.788 kb on - strand at 755.788 kb on - strand at 755.815 kb on + strand at 755.893 kb on + strand at 755.895 kb on + strand at 755.901 kb on - strand at 755.903 kb on + strand at 755.972 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm Wash/Settlers in Fresh BG11R in Test Tubes with Spin rep 1 remove 753,993 - +0.5 754,011 - -1.9 754,076 + Synpcc7942_0760 0.19 -1.6 754,418 - Synpcc7942_0760 0.77 -0.0 754,768 - -1.5 754,831 + -1.7 754,831 + +0.5 754,831 - -1.0 754,839 - -0.8 754,869 + Synpcc7942_0761 0.12 +1.0 754,871 + Synpcc7942_0761 0.13 -1.6 754,894 + Synpcc7942_0761 0.16 -2.8 754,894 + Synpcc7942_0761 0.16 -1.8 755,332 + Synpcc7942_0761 0.76 -0.0 755,345 + Synpcc7942_0761 0.78 -0.7 755,380 - Synpcc7942_0761 0.82 -0.6 755,695 - -0.4 755,757 + -3.2 755,788 - -0.5 755,788 - -2.7 755,788 - -2.1 755,815 + -0.1 755,893 + +1.0 755,895 + -0.0 755,901 - -1.0 755,903 + -0.1 755,972 + -1.2
Or see this region's nucleotide sequence