Experiment: Biofilm Wash/Settlers in Fresh BG11R in Test Tubes with Spin rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0691 and Synpcc7942_0692 overlap by 4 nucleotides Synpcc7942_0692 and Synpcc7942_0693 are separated by 61 nucleotides Synpcc7942_0693 and rps1 are separated by 52 nucleotides
Synpcc7942_0691: Synpcc7942_0691 - hypothetical protein, at 685,290 to 685,634
_0691
Synpcc7942_0692: Synpcc7942_0692 - hypothetical protein, at 685,631 to 686,185
_0692
Synpcc7942_0693: Synpcc7942_0693 - hypothetical protein, at 686,247 to 687,080
_0693
Synpcc7942_0694: rps1 - 30S ribosomal protein S1, at 687,133 to 688,056
rps1
Position (kb) 686
687
688 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 685.324 kb on + strand at 685.332 kb on - strand, within Synpcc7942_0691 at 685.332 kb on - strand, within Synpcc7942_0691 at 685.343 kb on + strand, within Synpcc7942_0691 at 685.351 kb on - strand, within Synpcc7942_0691 at 685.420 kb on + strand, within Synpcc7942_0691 at 685.420 kb on + strand, within Synpcc7942_0691 at 685.428 kb on - strand, within Synpcc7942_0691 at 685.428 kb on - strand, within Synpcc7942_0691 at 685.446 kb on - strand, within Synpcc7942_0691 at 685.458 kb on + strand, within Synpcc7942_0691 at 685.494 kb on + strand, within Synpcc7942_0691 at 685.494 kb on + strand, within Synpcc7942_0691 at 685.494 kb on + strand, within Synpcc7942_0691 at 685.495 kb on + strand, within Synpcc7942_0691 at 685.502 kb on + strand, within Synpcc7942_0691 at 685.504 kb on + strand, within Synpcc7942_0691 at 685.512 kb on - strand, within Synpcc7942_0691 at 685.514 kb on + strand, within Synpcc7942_0691 at 685.523 kb on - strand, within Synpcc7942_0691 at 685.562 kb on + strand, within Synpcc7942_0691 at 685.563 kb on + strand, within Synpcc7942_0691 at 685.571 kb on - strand, within Synpcc7942_0691 at 685.571 kb on - strand, within Synpcc7942_0691 at 685.573 kb on + strand, within Synpcc7942_0691 at 685.578 kb on + strand, within Synpcc7942_0691 at 685.592 kb on - strand, within Synpcc7942_0691 at 685.637 kb on - strand at 685.640 kb on + strand at 685.654 kb on + strand at 685.660 kb on + strand at 685.664 kb on + strand at 685.667 kb on - strand at 685.672 kb on - strand at 685.682 kb on + strand at 685.689 kb on - strand, within Synpcc7942_0692 at 685.689 kb on - strand, within Synpcc7942_0692 at 685.690 kb on - strand, within Synpcc7942_0692 at 685.690 kb on - strand, within Synpcc7942_0692 at 685.705 kb on + strand at 685.708 kb on - strand, within Synpcc7942_0692 at 685.716 kb on + strand, within Synpcc7942_0692 at 685.725 kb on + strand, within Synpcc7942_0692 at 685.725 kb on + strand, within Synpcc7942_0692 at 685.804 kb on + strand, within Synpcc7942_0692 at 685.872 kb on + strand, within Synpcc7942_0692 at 685.880 kb on - strand, within Synpcc7942_0692 at 685.886 kb on - strand, within Synpcc7942_0692 at 685.918 kb on + strand, within Synpcc7942_0692 at 685.957 kb on + strand, within Synpcc7942_0692 at 685.965 kb on - strand, within Synpcc7942_0692 at 686.041 kb on - strand, within Synpcc7942_0692 at 686.047 kb on - strand, within Synpcc7942_0692 at 686.048 kb on + strand, within Synpcc7942_0692 at 686.060 kb on - strand, within Synpcc7942_0692 at 686.112 kb on + strand, within Synpcc7942_0692 at 686.120 kb on + strand, within Synpcc7942_0692 at 686.120 kb on + strand, within Synpcc7942_0692 at 686.122 kb on - strand, within Synpcc7942_0692 at 686.128 kb on - strand, within Synpcc7942_0692 at 686.128 kb on - strand, within Synpcc7942_0692 at 686.138 kb on - strand at 686.138 kb on - strand at 686.139 kb on - strand at 686.140 kb on - strand at 686.164 kb on - strand at 686.168 kb on + strand at 686.189 kb on + strand at 686.189 kb on + strand at 686.189 kb on + strand at 686.196 kb on - strand at 686.197 kb on - strand at 686.203 kb on - strand at 686.214 kb on + strand at 686.224 kb on - strand at 686.254 kb on + strand at 686.345 kb on + strand, within Synpcc7942_0693 at 686.355 kb on + strand, within Synpcc7942_0693 at 686.449 kb on + strand, within Synpcc7942_0693 at 686.457 kb on - strand, within Synpcc7942_0693 at 686.469 kb on + strand, within Synpcc7942_0693 at 686.491 kb on + strand, within Synpcc7942_0693 at 686.576 kb on - strand, within Synpcc7942_0693 at 686.576 kb on - strand at 686.585 kb on + strand, within Synpcc7942_0693 at 686.669 kb on - strand, within Synpcc7942_0693 at 686.679 kb on - strand, within Synpcc7942_0693 at 686.728 kb on - strand, within Synpcc7942_0693 at 686.728 kb on - strand, within Synpcc7942_0693 at 686.739 kb on + strand, within Synpcc7942_0693 at 686.748 kb on - strand, within Synpcc7942_0693 at 686.753 kb on - strand, within Synpcc7942_0693 at 686.840 kb on + strand, within Synpcc7942_0693 at 686.852 kb on + strand, within Synpcc7942_0693 at 686.893 kb on + strand, within Synpcc7942_0693 at 686.904 kb on + strand, within Synpcc7942_0693 at 686.904 kb on + strand, within Synpcc7942_0693 at 686.912 kb on - strand, within Synpcc7942_0693 at 686.919 kb on + strand, within Synpcc7942_0693 at 686.935 kb on + strand, within Synpcc7942_0693 at 686.946 kb on + strand, within Synpcc7942_0693 at 686.947 kb on + strand, within Synpcc7942_0693 at 686.954 kb on - strand, within Synpcc7942_0693 at 686.955 kb on - strand, within Synpcc7942_0693 at 686.970 kb on + strand, within Synpcc7942_0693 at 686.970 kb on + strand, within Synpcc7942_0693 at 686.983 kb on - strand, within Synpcc7942_0693 at 686.998 kb on + strand at 686.998 kb on + strand at 687.033 kb on + strand at 687.038 kb on + strand at 687.046 kb on + strand at 687.054 kb on - strand at 687.063 kb on + strand at 687.148 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm Wash/Settlers in Fresh BG11R in Test Tubes with Spin rep 1 remove 685,324 + -1.4 685,332 - Synpcc7942_0691 0.12 +1.0 685,332 - Synpcc7942_0691 0.12 -0.9 685,343 + Synpcc7942_0691 0.15 -1.5 685,351 - Synpcc7942_0691 0.18 -0.6 685,420 + Synpcc7942_0691 0.38 -0.4 685,420 + Synpcc7942_0691 0.38 -1.6 685,428 - Synpcc7942_0691 0.40 -1.7 685,428 - Synpcc7942_0691 0.40 -2.7 685,446 - Synpcc7942_0691 0.45 +1.0 685,458 + Synpcc7942_0691 0.49 +3.3 685,494 + Synpcc7942_0691 0.59 +1.6 685,494 + Synpcc7942_0691 0.59 -1.1 685,494 + Synpcc7942_0691 0.59 -1.0 685,495 + Synpcc7942_0691 0.59 -3.8 685,502 + Synpcc7942_0691 0.61 +1.0 685,504 + Synpcc7942_0691 0.62 +1.9 685,512 - Synpcc7942_0691 0.64 +1.0 685,514 + Synpcc7942_0691 0.65 +1.2 685,523 - Synpcc7942_0691 0.68 -0.6 685,562 + Synpcc7942_0691 0.79 -2.2 685,563 + Synpcc7942_0691 0.79 -1.1 685,571 - Synpcc7942_0691 0.81 +1.2 685,571 - Synpcc7942_0691 0.81 -1.0 685,573 + Synpcc7942_0691 0.82 -0.0 685,578 + Synpcc7942_0691 0.83 +2.1 685,592 - Synpcc7942_0691 0.88 -0.6 685,637 - +3.0 685,640 + -1.4 685,654 + +1.0 685,660 + -0.9 685,664 + +0.8 685,667 - -1.3 685,672 - -1.5 685,682 + -0.9 685,689 - Synpcc7942_0692 0.10 +1.4 685,689 - Synpcc7942_0692 0.10 -1.1 685,690 - Synpcc7942_0692 0.11 -0.5 685,690 - Synpcc7942_0692 0.11 -0.9 685,705 + +1.0 685,708 - Synpcc7942_0692 0.14 -1.6 685,716 + Synpcc7942_0692 0.15 +1.0 685,725 + Synpcc7942_0692 0.17 +0.4 685,725 + Synpcc7942_0692 0.17 +1.0 685,804 + Synpcc7942_0692 0.31 -2.5 685,872 + Synpcc7942_0692 0.43 -1.0 685,880 - Synpcc7942_0692 0.45 -1.0 685,886 - Synpcc7942_0692 0.46 +0.4 685,918 + Synpcc7942_0692 0.52 +1.4 685,957 + Synpcc7942_0692 0.59 +1.2 685,965 - Synpcc7942_0692 0.60 -1.2 686,041 - Synpcc7942_0692 0.74 -2.4 686,047 - Synpcc7942_0692 0.75 -1.3 686,048 + Synpcc7942_0692 0.75 +1.6 686,060 - Synpcc7942_0692 0.77 -1.6 686,112 + Synpcc7942_0692 0.87 +1.3 686,120 + Synpcc7942_0692 0.88 -1.3 686,120 + Synpcc7942_0692 0.88 -0.5 686,122 - Synpcc7942_0692 0.88 +0.1 686,128 - Synpcc7942_0692 0.90 -2.2 686,128 - Synpcc7942_0692 0.90 -1.1 686,138 - -0.5 686,138 - +0.3 686,139 - +1.0 686,140 - +1.0 686,164 - +0.5 686,168 + -1.4 686,189 + -0.3 686,189 + -0.6 686,189 + +1.7 686,196 - -0.5 686,197 - -2.3 686,203 - +1.3 686,214 + -1.2 686,224 - +2.3 686,254 + +1.5 686,345 + Synpcc7942_0693 0.12 -0.0 686,355 + Synpcc7942_0693 0.13 +1.0 686,449 + Synpcc7942_0693 0.24 -2.2 686,457 - Synpcc7942_0693 0.25 -0.0 686,469 + Synpcc7942_0693 0.27 -0.0 686,491 + Synpcc7942_0693 0.29 -1.3 686,576 - Synpcc7942_0693 0.39 +1.0 686,576 - -1.5 686,585 + Synpcc7942_0693 0.41 -0.6 686,669 - Synpcc7942_0693 0.51 -0.3 686,679 - Synpcc7942_0693 0.52 +2.6 686,728 - Synpcc7942_0693 0.58 -0.0 686,728 - Synpcc7942_0693 0.58 +1.0 686,739 + Synpcc7942_0693 0.59 +1.0 686,748 - Synpcc7942_0693 0.60 +1.0 686,753 - Synpcc7942_0693 0.61 -1.3 686,840 + Synpcc7942_0693 0.71 +1.0 686,852 + Synpcc7942_0693 0.73 -0.0 686,893 + Synpcc7942_0693 0.77 -0.6 686,904 + Synpcc7942_0693 0.79 -0.8 686,904 + Synpcc7942_0693 0.79 +2.0 686,912 - Synpcc7942_0693 0.80 -1.0 686,919 + Synpcc7942_0693 0.81 +1.0 686,935 + Synpcc7942_0693 0.82 -0.6 686,946 + Synpcc7942_0693 0.84 +1.0 686,947 + Synpcc7942_0693 0.84 -2.9 686,954 - Synpcc7942_0693 0.85 +2.0 686,955 - Synpcc7942_0693 0.85 -1.3 686,970 + Synpcc7942_0693 0.87 -1.0 686,970 + Synpcc7942_0693 0.87 -0.3 686,983 - Synpcc7942_0693 0.88 -0.6 686,998 + -2.8 686,998 + -1.5 687,033 + +4.8 687,038 + +1.0 687,046 + +1.7 687,054 - +0.4 687,063 + +1.5 687,148 - -0.3
Or see this region's nucleotide sequence