Experiment: Biofilm Wash/Settlers in Fresh BG11R in Test Tubes with Spin rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hrcA and Synpcc7942_0617 are separated by 11 nucleotides Synpcc7942_0617 and ahcY are separated by 131 nucleotides
Synpcc7942_0616: hrcA - heat-inducible transcription repressor, at 606,238 to 607,299
hrcA
Synpcc7942_0617: Synpcc7942_0617 - hypothetical protein, at 607,311 to 607,688
_0617
Synpcc7942_0618: ahcY - S-adenosyl-L-homocysteine hydrolase, at 607,820 to 609,100
ahcY
Position (kb) 607
608 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 606.323 kb on + strand at 606.323 kb on + strand at 606.323 kb on + strand at 606.323 kb on + strand at 606.326 kb on - strand at 606.331 kb on - strand at 606.331 kb on - strand at 606.342 kb on + strand at 606.357 kb on + strand, within hrcA at 606.382 kb on + strand, within hrcA at 606.383 kb on - strand, within hrcA at 606.390 kb on - strand, within hrcA at 606.399 kb on - strand, within hrcA at 606.406 kb on + strand, within hrcA at 606.406 kb on + strand, within hrcA at 606.454 kb on - strand, within hrcA at 606.465 kb on + strand, within hrcA at 606.465 kb on + strand, within hrcA at 606.491 kb on - strand, within hrcA at 606.497 kb on - strand, within hrcA at 606.502 kb on + strand, within hrcA at 606.510 kb on - strand, within hrcA at 606.517 kb on + strand, within hrcA at 606.530 kb on + strand, within hrcA at 606.538 kb on - strand, within hrcA at 606.563 kb on + strand, within hrcA at 606.565 kb on + strand, within hrcA at 606.573 kb on + strand, within hrcA at 606.573 kb on + strand, within hrcA at 606.583 kb on + strand, within hrcA at 606.591 kb on - strand, within hrcA at 606.669 kb on - strand, within hrcA at 606.684 kb on + strand, within hrcA at 606.697 kb on - strand, within hrcA at 606.719 kb on + strand, within hrcA at 606.726 kb on - strand, within hrcA at 606.773 kb on - strand, within hrcA at 606.826 kb on + strand, within hrcA at 606.833 kb on + strand, within hrcA at 606.834 kb on - strand, within hrcA at 606.846 kb on + strand, within hrcA at 606.854 kb on - strand, within hrcA at 606.864 kb on - strand, within hrcA at 606.864 kb on - strand, within hrcA at 606.871 kb on + strand, within hrcA at 606.915 kb on + strand, within hrcA at 606.943 kb on + strand, within hrcA at 606.952 kb on + strand, within hrcA at 606.959 kb on + strand, within hrcA at 606.969 kb on + strand, within hrcA at 607.030 kb on - strand, within hrcA at 607.057 kb on + strand, within hrcA at 607.073 kb on + strand, within hrcA at 607.121 kb on + strand, within hrcA at 607.133 kb on + strand, within hrcA at 607.141 kb on - strand, within hrcA at 607.141 kb on - strand, within hrcA at 607.144 kb on + strand, within hrcA at 607.156 kb on + strand, within hrcA at 607.168 kb on + strand, within hrcA at 607.168 kb on + strand, within hrcA at 607.178 kb on + strand, within hrcA at 607.210 kb on - strand at 607.233 kb on - strand at 607.238 kb on + strand at 607.301 kb on - strand at 607.301 kb on - strand at 607.301 kb on - strand at 607.307 kb on - strand at 607.307 kb on - strand at 607.365 kb on + strand, within Synpcc7942_0617 at 607.373 kb on + strand, within Synpcc7942_0617 at 607.374 kb on - strand, within Synpcc7942_0617 at 607.381 kb on - strand, within Synpcc7942_0617 at 607.389 kb on + strand, within Synpcc7942_0617 at 607.394 kb on + strand, within Synpcc7942_0617 at 607.412 kb on + strand, within Synpcc7942_0617 at 607.420 kb on - strand, within Synpcc7942_0617 at 607.420 kb on - strand, within Synpcc7942_0617 at 607.420 kb on - strand, within Synpcc7942_0617 at 607.421 kb on - strand, within Synpcc7942_0617 at 607.447 kb on - strand, within Synpcc7942_0617 at 607.447 kb on - strand, within Synpcc7942_0617 at 607.449 kb on + strand, within Synpcc7942_0617 at 607.455 kb on + strand, within Synpcc7942_0617 at 607.472 kb on + strand, within Synpcc7942_0617 at 607.492 kb on - strand, within Synpcc7942_0617 at 607.510 kb on + strand, within Synpcc7942_0617 at 607.511 kb on + strand, within Synpcc7942_0617 at 607.511 kb on - strand, within Synpcc7942_0617 at 607.511 kb on - strand, within Synpcc7942_0617 at 607.528 kb on + strand, within Synpcc7942_0617 at 607.531 kb on + strand, within Synpcc7942_0617 at 607.536 kb on - strand, within Synpcc7942_0617 at 607.543 kb on + strand, within Synpcc7942_0617 at 607.570 kb on - strand at 607.588 kb on + strand, within Synpcc7942_0617 at 607.594 kb on - strand, within Synpcc7942_0617 at 607.646 kb on + strand, within Synpcc7942_0617 at 607.648 kb on + strand, within Synpcc7942_0617 at 607.656 kb on - strand at 607.691 kb on - strand at 607.695 kb on + strand at 607.696 kb on + strand at 607.703 kb on - strand at 607.725 kb on + strand at 607.725 kb on + strand at 607.732 kb on - strand at 607.754 kb on + strand at 607.756 kb on - strand at 607.824 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm Wash/Settlers in Fresh BG11R in Test Tubes with Spin rep 1 remove 606,323 + +3.3 606,323 + -2.8 606,323 + +2.0 606,323 + -0.3 606,326 - -0.6 606,331 - +3.3 606,331 - +1.2 606,342 + -0.6 606,357 + hrcA Synpcc7942_0616 0.11 +1.4 606,382 + hrcA Synpcc7942_0616 0.14 +0.1 606,383 - hrcA Synpcc7942_0616 0.14 -0.3 606,390 - hrcA Synpcc7942_0616 0.14 -1.8 606,399 - hrcA Synpcc7942_0616 0.15 -0.5 606,406 + hrcA Synpcc7942_0616 0.16 -0.2 606,406 + hrcA Synpcc7942_0616 0.16 -0.1 606,454 - hrcA Synpcc7942_0616 0.20 +3.0 606,465 + hrcA Synpcc7942_0616 0.21 -0.9 606,465 + hrcA Synpcc7942_0616 0.21 +1.0 606,491 - hrcA Synpcc7942_0616 0.24 +1.0 606,497 - hrcA Synpcc7942_0616 0.24 +1.0 606,502 + hrcA Synpcc7942_0616 0.25 -1.2 606,510 - hrcA Synpcc7942_0616 0.26 -0.6 606,517 + hrcA Synpcc7942_0616 0.26 -0.2 606,530 + hrcA Synpcc7942_0616 0.27 -0.0 606,538 - hrcA Synpcc7942_0616 0.28 -0.0 606,563 + hrcA Synpcc7942_0616 0.31 +0.4 606,565 + hrcA Synpcc7942_0616 0.31 -1.9 606,573 + hrcA Synpcc7942_0616 0.32 +1.8 606,573 + hrcA Synpcc7942_0616 0.32 -1.6 606,583 + hrcA Synpcc7942_0616 0.32 -1.2 606,591 - hrcA Synpcc7942_0616 0.33 -0.0 606,669 - hrcA Synpcc7942_0616 0.41 -1.4 606,684 + hrcA Synpcc7942_0616 0.42 +0.9 606,697 - hrcA Synpcc7942_0616 0.43 +1.6 606,719 + hrcA Synpcc7942_0616 0.45 -0.6 606,726 - hrcA Synpcc7942_0616 0.46 -0.6 606,773 - hrcA Synpcc7942_0616 0.50 +1.6 606,826 + hrcA Synpcc7942_0616 0.55 -0.6 606,833 + hrcA Synpcc7942_0616 0.56 -3.9 606,834 - hrcA Synpcc7942_0616 0.56 +2.6 606,846 + hrcA Synpcc7942_0616 0.57 -0.2 606,854 - hrcA Synpcc7942_0616 0.58 -0.0 606,864 - hrcA Synpcc7942_0616 0.59 +0.5 606,864 - hrcA Synpcc7942_0616 0.59 +0.2 606,871 + hrcA Synpcc7942_0616 0.60 +1.0 606,915 + hrcA Synpcc7942_0616 0.64 +1.0 606,943 + hrcA Synpcc7942_0616 0.66 +1.0 606,952 + hrcA Synpcc7942_0616 0.67 -1.8 606,959 + hrcA Synpcc7942_0616 0.68 -0.0 606,969 + hrcA Synpcc7942_0616 0.69 -0.3 607,030 - hrcA Synpcc7942_0616 0.75 -1.1 607,057 + hrcA Synpcc7942_0616 0.77 +0.2 607,073 + hrcA Synpcc7942_0616 0.79 -2.0 607,121 + hrcA Synpcc7942_0616 0.83 -0.0 607,133 + hrcA Synpcc7942_0616 0.84 -1.0 607,141 - hrcA Synpcc7942_0616 0.85 -0.5 607,141 - hrcA Synpcc7942_0616 0.85 -0.5 607,144 + hrcA Synpcc7942_0616 0.85 -1.2 607,156 + hrcA Synpcc7942_0616 0.86 +1.8 607,168 + hrcA Synpcc7942_0616 0.88 +1.0 607,168 + hrcA Synpcc7942_0616 0.88 -1.5 607,178 + hrcA Synpcc7942_0616 0.89 -1.1 607,210 - -1.1 607,233 - -0.7 607,238 + -1.5 607,301 - +0.2 607,301 - +1.2 607,301 - +0.5 607,307 - -0.8 607,307 - +0.5 607,365 + Synpcc7942_0617 0.14 +1.0 607,373 + Synpcc7942_0617 0.16 +1.0 607,374 - Synpcc7942_0617 0.17 -2.3 607,381 - Synpcc7942_0617 0.19 -0.0 607,389 + Synpcc7942_0617 0.21 -1.8 607,394 + Synpcc7942_0617 0.22 +1.0 607,412 + Synpcc7942_0617 0.27 +2.6 607,420 - Synpcc7942_0617 0.29 +1.2 607,420 - Synpcc7942_0617 0.29 -0.6 607,420 - Synpcc7942_0617 0.29 -1.3 607,421 - Synpcc7942_0617 0.29 -0.6 607,447 - Synpcc7942_0617 0.36 -2.9 607,447 - Synpcc7942_0617 0.36 -1.3 607,449 + Synpcc7942_0617 0.37 +1.0 607,455 + Synpcc7942_0617 0.38 -1.0 607,472 + Synpcc7942_0617 0.43 -1.8 607,492 - Synpcc7942_0617 0.48 -1.3 607,510 + Synpcc7942_0617 0.53 -2.2 607,511 + Synpcc7942_0617 0.53 -0.7 607,511 - Synpcc7942_0617 0.53 -0.6 607,511 - Synpcc7942_0617 0.53 -1.4 607,528 + Synpcc7942_0617 0.57 -1.8 607,531 + Synpcc7942_0617 0.58 -1.0 607,536 - Synpcc7942_0617 0.60 -2.6 607,543 + Synpcc7942_0617 0.61 -0.0 607,570 - -2.8 607,588 + Synpcc7942_0617 0.73 -1.0 607,594 - Synpcc7942_0617 0.75 -0.9 607,646 + Synpcc7942_0617 0.89 -0.6 607,648 + Synpcc7942_0617 0.89 -2.5 607,656 - +1.2 607,691 - +0.4 607,695 + -0.8 607,696 + +1.0 607,703 - +1.0 607,725 + +0.2 607,725 + -1.7 607,732 - +1.4 607,754 + +1.0 607,756 - -0.3 607,824 - +1.0
Or see this region's nucleotide sequence