Experiment: Biofilm Wash/Settlers in Fresh BG11R in Test Tubes with Spin rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0434 and Synpcc7942_0435 are separated by 10 nucleotides Synpcc7942_0435 and Synpcc7942_0436 are separated by 14 nucleotides Synpcc7942_0436 and Synpcc7942_0437 are separated by 312 nucleotides Synpcc7942_0437 and Synpcc7942_0438 overlap by 41 nucleotides
Synpcc7942_0434: Synpcc7942_0434 - hypothetical protein, at 425,057 to 426,064
_0434
Synpcc7942_0435: Synpcc7942_0435 - hypothetical protein, at 426,075 to 426,830
_0435
Synpcc7942_0436: Synpcc7942_0436 - hypothetical protein, at 426,845 to 427,150
_0436
Synpcc7942_0437: Synpcc7942_0437 - putative glutathione peroxidase, at 427,463 to 428,029
_0437
Synpcc7942_0438: Synpcc7942_0438 - hypothetical protein, at 427,989 to 428,495
_0438
Position (kb) 426
427
428 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 425.917 kb on - strand, within Synpcc7942_0434 at 425.960 kb on - strand, within Synpcc7942_0434 at 425.988 kb on - strand at 426.039 kb on - strand at 426.052 kb on - strand at 426.076 kb on - strand at 426.078 kb on + strand at 426.080 kb on + strand at 426.097 kb on - strand at 426.124 kb on + strand at 426.132 kb on - strand at 426.146 kb on - strand at 426.161 kb on + strand, within Synpcc7942_0435 at 426.205 kb on + strand, within Synpcc7942_0435 at 426.209 kb on + strand, within Synpcc7942_0435 at 426.213 kb on - strand, within Synpcc7942_0435 at 426.213 kb on - strand, within Synpcc7942_0435 at 426.265 kb on + strand, within Synpcc7942_0435 at 426.326 kb on + strand, within Synpcc7942_0435 at 426.391 kb on + strand, within Synpcc7942_0435 at 426.404 kb on - strand, within Synpcc7942_0435 at 426.498 kb on - strand, within Synpcc7942_0435 at 426.503 kb on + strand, within Synpcc7942_0435 at 426.511 kb on + strand, within Synpcc7942_0435 at 426.518 kb on + strand, within Synpcc7942_0435 at 426.518 kb on + strand, within Synpcc7942_0435 at 426.519 kb on - strand, within Synpcc7942_0435 at 426.519 kb on - strand, within Synpcc7942_0435 at 426.519 kb on - strand, within Synpcc7942_0435 at 426.519 kb on - strand, within Synpcc7942_0435 at 426.523 kb on + strand, within Synpcc7942_0435 at 426.531 kb on - strand, within Synpcc7942_0435 at 426.544 kb on - strand, within Synpcc7942_0435 at 426.549 kb on - strand, within Synpcc7942_0435 at 426.568 kb on + strand, within Synpcc7942_0435 at 426.583 kb on + strand, within Synpcc7942_0435 at 426.591 kb on + strand, within Synpcc7942_0435 at 426.619 kb on + strand, within Synpcc7942_0435 at 426.619 kb on + strand, within Synpcc7942_0435 at 426.629 kb on + strand, within Synpcc7942_0435 at 426.642 kb on - strand, within Synpcc7942_0435 at 426.655 kb on - strand, within Synpcc7942_0435 at 426.656 kb on - strand, within Synpcc7942_0435 at 426.695 kb on + strand, within Synpcc7942_0435 at 426.703 kb on - strand, within Synpcc7942_0435 at 426.703 kb on - strand, within Synpcc7942_0435 at 426.708 kb on + strand, within Synpcc7942_0435 at 426.708 kb on + strand, within Synpcc7942_0435 at 426.716 kb on - strand, within Synpcc7942_0435 at 426.730 kb on + strand, within Synpcc7942_0435 at 426.740 kb on + strand, within Synpcc7942_0435 at 426.809 kb on + strand at 426.824 kb on - strand at 426.839 kb on + strand at 426.857 kb on + strand at 426.903 kb on - strand, within Synpcc7942_0436 at 427.011 kb on - strand, within Synpcc7942_0436 at 427.025 kb on - strand, within Synpcc7942_0436 at 427.027 kb on + strand, within Synpcc7942_0436 at 427.027 kb on + strand, within Synpcc7942_0436 at 427.027 kb on + strand, within Synpcc7942_0436 at 427.189 kb on - strand at 427.189 kb on - strand at 427.189 kb on - strand at 427.214 kb on - strand at 427.359 kb on - strand at 427.497 kb on - strand at 427.679 kb on - strand, within Synpcc7942_0437 at 427.729 kb on + strand, within Synpcc7942_0437 at 427.930 kb on - strand, within Synpcc7942_0437 at 427.952 kb on - strand, within Synpcc7942_0437 at 428.014 kb on + strand at 428.097 kb on + strand, within Synpcc7942_0438
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm Wash/Settlers in Fresh BG11R in Test Tubes with Spin rep 1 remove 425,917 - Synpcc7942_0434 0.85 +1.6 425,960 - Synpcc7942_0434 0.90 +1.0 425,988 - -0.6 426,039 - +1.0 426,052 - +1.0 426,076 - +1.0 426,078 + +1.0 426,080 + -0.3 426,097 - +0.1 426,124 + -1.0 426,132 - -0.0 426,146 - -0.3 426,161 + Synpcc7942_0435 0.11 +1.0 426,205 + Synpcc7942_0435 0.17 -0.4 426,209 + Synpcc7942_0435 0.18 -1.0 426,213 - Synpcc7942_0435 0.18 -0.0 426,213 - Synpcc7942_0435 0.18 -1.3 426,265 + Synpcc7942_0435 0.25 -1.8 426,326 + Synpcc7942_0435 0.33 +1.0 426,391 + Synpcc7942_0435 0.42 +1.0 426,404 - Synpcc7942_0435 0.44 -0.0 426,498 - Synpcc7942_0435 0.56 -2.1 426,503 + Synpcc7942_0435 0.57 -0.0 426,511 + Synpcc7942_0435 0.58 +1.0 426,518 + Synpcc7942_0435 0.59 -0.6 426,518 + Synpcc7942_0435 0.59 -2.8 426,519 - Synpcc7942_0435 0.59 -3.0 426,519 - Synpcc7942_0435 0.59 -1.0 426,519 - Synpcc7942_0435 0.59 +1.0 426,519 - Synpcc7942_0435 0.59 -0.0 426,523 + Synpcc7942_0435 0.59 -2.1 426,531 - Synpcc7942_0435 0.60 -0.6 426,544 - Synpcc7942_0435 0.62 +1.0 426,549 - Synpcc7942_0435 0.63 +1.0 426,568 + Synpcc7942_0435 0.65 +1.0 426,583 + Synpcc7942_0435 0.67 -0.0 426,591 + Synpcc7942_0435 0.68 +0.4 426,619 + Synpcc7942_0435 0.72 -0.6 426,619 + Synpcc7942_0435 0.72 -0.0 426,629 + Synpcc7942_0435 0.73 -1.6 426,642 - Synpcc7942_0435 0.75 -0.0 426,655 - Synpcc7942_0435 0.77 -1.5 426,656 - Synpcc7942_0435 0.77 -1.6 426,695 + Synpcc7942_0435 0.82 +1.0 426,703 - Synpcc7942_0435 0.83 +0.4 426,703 - Synpcc7942_0435 0.83 -1.8 426,708 + Synpcc7942_0435 0.84 -1.3 426,708 + Synpcc7942_0435 0.84 -1.8 426,716 - Synpcc7942_0435 0.85 -0.0 426,730 + Synpcc7942_0435 0.87 -2.0 426,740 + Synpcc7942_0435 0.88 -2.5 426,809 + -1.0 426,824 - -1.0 426,839 + -3.1 426,857 + +1.0 426,903 - Synpcc7942_0436 0.19 -0.9 427,011 - Synpcc7942_0436 0.54 -2.2 427,025 - Synpcc7942_0436 0.59 -1.2 427,027 + Synpcc7942_0436 0.59 -1.3 427,027 + Synpcc7942_0436 0.59 -0.3 427,027 + Synpcc7942_0436 0.59 -0.4 427,189 - +1.7 427,189 - -1.0 427,189 - -3.2 427,214 - -1.2 427,359 - +3.3 427,497 - +0.5 427,679 - Synpcc7942_0437 0.38 +0.4 427,729 + Synpcc7942_0437 0.47 -1.7 427,930 - Synpcc7942_0437 0.82 -2.2 427,952 - Synpcc7942_0437 0.86 -1.0 428,014 + +1.0 428,097 + Synpcc7942_0438 0.21 -1.9
Or see this region's nucleotide sequence