Experiment: Biofilm Wash/Settlers in Fresh BG11R in Test Tubes with Spin rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0412 and ndhL are separated by 0 nucleotides ndhL and Synpcc7942_0414 are separated by 247 nucleotides Synpcc7942_0414 and Synpcc7942_0415 overlap by 21 nucleotides
Synpcc7942_0412: Synpcc7942_0412 - hypothetical protein, at 403,022 to 403,351
_0412
Synpcc7942_0413: ndhL - hypothetical protein, at 403,352 to 403,768
ndhL
Synpcc7942_0414: Synpcc7942_0414 - hypothetical protein, at 404,016 to 405,188
_0414
Synpcc7942_0415: Synpcc7942_0415 - hypothetical protein, at 405,168 to 406,145
_0415
Position (kb) 404
405
406 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 403.028 kb on - strand at 403.070 kb on - strand, within Synpcc7942_0412 at 403.074 kb on + strand, within Synpcc7942_0412 at 403.091 kb on - strand, within Synpcc7942_0412 at 403.176 kb on + strand, within Synpcc7942_0412 at 403.210 kb on + strand, within Synpcc7942_0412 at 403.218 kb on - strand, within Synpcc7942_0412 at 403.221 kb on + strand, within Synpcc7942_0412 at 403.287 kb on + strand, within Synpcc7942_0412 at 403.287 kb on + strand, within Synpcc7942_0412 at 403.287 kb on + strand, within Synpcc7942_0412 at 403.295 kb on - strand, within Synpcc7942_0412 at 403.295 kb on - strand, within Synpcc7942_0412 at 403.295 kb on - strand, within Synpcc7942_0412 at 403.295 kb on - strand, within Synpcc7942_0412 at 403.297 kb on - strand, within Synpcc7942_0412 at 403.559 kb on + strand, within ndhL at 403.570 kb on + strand, within ndhL at 403.572 kb on + strand, within ndhL at 403.572 kb on + strand, within ndhL at 403.580 kb on - strand, within ndhL at 403.580 kb on - strand, within ndhL at 403.595 kb on + strand, within ndhL at 403.968 kb on + strand at 403.994 kb on - strand at 404.005 kb on - strand at 404.093 kb on - strand at 404.139 kb on - strand, within Synpcc7942_0414 at 404.139 kb on - strand, within Synpcc7942_0414 at 404.148 kb on + strand, within Synpcc7942_0414 at 404.155 kb on + strand, within Synpcc7942_0414 at 404.163 kb on - strand, within Synpcc7942_0414 at 404.163 kb on - strand, within Synpcc7942_0414 at 404.186 kb on + strand, within Synpcc7942_0414 at 404.186 kb on + strand, within Synpcc7942_0414 at 404.193 kb on - strand, within Synpcc7942_0414 at 404.249 kb on + strand, within Synpcc7942_0414 at 404.253 kb on + strand, within Synpcc7942_0414 at 404.261 kb on + strand, within Synpcc7942_0414 at 404.261 kb on - strand, within Synpcc7942_0414 at 404.267 kb on - strand, within Synpcc7942_0414 at 404.317 kb on - strand, within Synpcc7942_0414 at 404.392 kb on + strand, within Synpcc7942_0414 at 404.443 kb on + strand, within Synpcc7942_0414 at 404.448 kb on + strand, within Synpcc7942_0414 at 404.451 kb on - strand, within Synpcc7942_0414 at 404.461 kb on - strand, within Synpcc7942_0414 at 404.511 kb on - strand, within Synpcc7942_0414 at 404.522 kb on + strand, within Synpcc7942_0414 at 404.522 kb on + strand, within Synpcc7942_0414 at 404.523 kb on + strand, within Synpcc7942_0414 at 404.523 kb on + strand, within Synpcc7942_0414 at 404.530 kb on - strand, within Synpcc7942_0414 at 404.531 kb on - strand, within Synpcc7942_0414 at 404.568 kb on + strand, within Synpcc7942_0414 at 404.568 kb on + strand, within Synpcc7942_0414 at 404.568 kb on + strand, within Synpcc7942_0414 at 404.576 kb on - strand, within Synpcc7942_0414 at 404.667 kb on - strand, within Synpcc7942_0414 at 404.691 kb on - strand, within Synpcc7942_0414 at 404.729 kb on + strand, within Synpcc7942_0414 at 404.734 kb on - strand, within Synpcc7942_0414 at 404.742 kb on - strand, within Synpcc7942_0414 at 404.742 kb on - strand, within Synpcc7942_0414 at 404.746 kb on + strand, within Synpcc7942_0414 at 404.769 kb on + strand, within Synpcc7942_0414 at 404.772 kb on - strand, within Synpcc7942_0414 at 404.772 kb on - strand, within Synpcc7942_0414 at 404.796 kb on - strand, within Synpcc7942_0414 at 404.800 kb on + strand, within Synpcc7942_0414 at 404.805 kb on + strand, within Synpcc7942_0414 at 404.823 kb on + strand, within Synpcc7942_0414 at 404.831 kb on - strand, within Synpcc7942_0414 at 404.860 kb on + strand, within Synpcc7942_0414 at 404.953 kb on + strand, within Synpcc7942_0414 at 404.953 kb on + strand, within Synpcc7942_0414 at 404.953 kb on + strand, within Synpcc7942_0414 at 404.954 kb on - strand, within Synpcc7942_0414 at 404.958 kb on + strand, within Synpcc7942_0414 at 404.961 kb on - strand, within Synpcc7942_0414 at 404.974 kb on - strand, within Synpcc7942_0414 at 404.976 kb on + strand, within Synpcc7942_0414 at 404.978 kb on + strand, within Synpcc7942_0414 at 405.019 kb on + strand, within Synpcc7942_0414 at 405.022 kb on - strand, within Synpcc7942_0414 at 405.027 kb on + strand, within Synpcc7942_0414 at 405.076 kb on - strand at 405.081 kb on + strand at 405.081 kb on + strand at 405.145 kb on + strand at 405.183 kb on + strand at 405.206 kb on + strand at 405.206 kb on + strand at 405.208 kb on + strand at 405.208 kb on + strand at 405.208 kb on + strand at 405.208 kb on + strand at 405.208 kb on + strand at 405.208 kb on + strand at 405.208 kb on + strand at 405.208 kb on + strand at 405.208 kb on + strand at 405.208 kb on + strand at 405.208 kb on + strand at 405.208 kb on + strand at 405.208 kb on + strand at 405.208 kb on + strand at 405.208 kb on + strand at 405.216 kb on - strand at 405.216 kb on - strand at 405.216 kb on - strand at 405.216 kb on - strand at 405.216 kb on - strand at 405.216 kb on - strand at 405.216 kb on - strand at 405.216 kb on - strand at 405.216 kb on - strand at 405.228 kb on - strand at 405.228 kb on - strand at 405.252 kb on + strand at 405.278 kb on + strand at 405.296 kb on - strand, within Synpcc7942_0415 at 405.323 kb on + strand, within Synpcc7942_0415 at 405.337 kb on + strand, within Synpcc7942_0415 at 405.353 kb on + strand, within Synpcc7942_0415 at 405.355 kb on - strand, within Synpcc7942_0415 at 405.368 kb on + strand, within Synpcc7942_0415 at 405.378 kb on + strand, within Synpcc7942_0415 at 405.391 kb on + strand, within Synpcc7942_0415 at 405.419 kb on + strand, within Synpcc7942_0415 at 405.419 kb on + strand, within Synpcc7942_0415 at 405.437 kb on + strand, within Synpcc7942_0415 at 405.438 kb on + strand, within Synpcc7942_0415 at 405.443 kb on + strand, within Synpcc7942_0415 at 405.443 kb on + strand, within Synpcc7942_0415 at 405.446 kb on - strand, within Synpcc7942_0415 at 405.473 kb on + strand, within Synpcc7942_0415 at 405.473 kb on + strand, within Synpcc7942_0415 at 405.511 kb on - strand, within Synpcc7942_0415 at 405.538 kb on + strand, within Synpcc7942_0415 at 405.541 kb on - strand, within Synpcc7942_0415 at 405.543 kb on + strand, within Synpcc7942_0415 at 405.543 kb on + strand, within Synpcc7942_0415 at 405.546 kb on - strand, within Synpcc7942_0415 at 405.591 kb on - strand, within Synpcc7942_0415 at 405.608 kb on - strand, within Synpcc7942_0415 at 405.627 kb on - strand, within Synpcc7942_0415 at 405.634 kb on + strand, within Synpcc7942_0415 at 405.634 kb on + strand, within Synpcc7942_0415 at 405.634 kb on + strand, within Synpcc7942_0415 at 405.634 kb on + strand, within Synpcc7942_0415 at 405.642 kb on - strand, within Synpcc7942_0415 at 405.642 kb on - strand, within Synpcc7942_0415 at 405.646 kb on + strand, within Synpcc7942_0415 at 405.654 kb on - strand, within Synpcc7942_0415 at 405.654 kb on - strand, within Synpcc7942_0415 at 405.654 kb on - strand, within Synpcc7942_0415 at 405.654 kb on - strand, within Synpcc7942_0415 at 405.759 kb on - strand, within Synpcc7942_0415 at 405.759 kb on - strand, within Synpcc7942_0415 at 405.793 kb on + strand, within Synpcc7942_0415 at 405.799 kb on - strand, within Synpcc7942_0415 at 405.833 kb on - strand, within Synpcc7942_0415 at 405.833 kb on - strand, within Synpcc7942_0415 at 405.844 kb on + strand, within Synpcc7942_0415 at 405.844 kb on + strand, within Synpcc7942_0415 at 405.849 kb on + strand, within Synpcc7942_0415 at 405.850 kb on + strand, within Synpcc7942_0415 at 405.856 kb on + strand, within Synpcc7942_0415 at 405.856 kb on + strand, within Synpcc7942_0415 at 405.884 kb on + strand, within Synpcc7942_0415 at 405.884 kb on + strand, within Synpcc7942_0415 at 405.884 kb on + strand, within Synpcc7942_0415 at 405.904 kb on + strand, within Synpcc7942_0415 at 405.907 kb on - strand, within Synpcc7942_0415 at 405.918 kb on + strand, within Synpcc7942_0415 at 405.939 kb on + strand, within Synpcc7942_0415 at 405.955 kb on + strand, within Synpcc7942_0415 at 405.958 kb on + strand, within Synpcc7942_0415 at 405.958 kb on + strand at 405.958 kb on + strand, within Synpcc7942_0415 at 406.008 kb on - strand, within Synpcc7942_0415 at 406.051 kb on + strand at 406.056 kb on + strand at 406.056 kb on + strand at 406.062 kb on + strand at 406.090 kb on + strand at 406.107 kb on - strand at 406.107 kb on - strand at 406.117 kb on - strand at 406.131 kb on + strand at 406.139 kb on - strand at 406.153 kb on + strand at 406.155 kb on + strand at 406.155 kb on + strand at 406.161 kb on - strand at 406.163 kb on - strand at 406.163 kb on - strand at 406.165 kb on + strand at 406.172 kb on + strand at 406.173 kb on - strand at 406.173 kb on - strand at 406.180 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm Wash/Settlers in Fresh BG11R in Test Tubes with Spin rep 1 remove 403,028 - -0.0 403,070 - Synpcc7942_0412 0.15 -0.0 403,074 + Synpcc7942_0412 0.16 -0.0 403,091 - Synpcc7942_0412 0.21 -1.3 403,176 + Synpcc7942_0412 0.47 +1.0 403,210 + Synpcc7942_0412 0.57 -1.5 403,218 - Synpcc7942_0412 0.59 -1.0 403,221 + Synpcc7942_0412 0.60 +1.0 403,287 + Synpcc7942_0412 0.80 +1.0 403,287 + Synpcc7942_0412 0.80 +0.2 403,287 + Synpcc7942_0412 0.80 +0.8 403,295 - Synpcc7942_0412 0.83 +0.2 403,295 - Synpcc7942_0412 0.83 -0.3 403,295 - Synpcc7942_0412 0.83 +0.4 403,295 - Synpcc7942_0412 0.83 +1.0 403,297 - Synpcc7942_0412 0.83 -0.6 403,559 + ndhL Synpcc7942_0413 0.50 +1.0 403,570 + ndhL Synpcc7942_0413 0.52 -1.3 403,572 + ndhL Synpcc7942_0413 0.53 -1.0 403,572 + ndhL Synpcc7942_0413 0.53 +0.6 403,580 - ndhL Synpcc7942_0413 0.55 -0.6 403,580 - ndhL Synpcc7942_0413 0.55 -0.0 403,595 + ndhL Synpcc7942_0413 0.58 +1.5 403,968 + -0.8 403,994 - -0.0 404,005 - -1.0 404,093 - -0.0 404,139 - Synpcc7942_0414 0.10 -1.3 404,139 - Synpcc7942_0414 0.10 -0.6 404,148 + Synpcc7942_0414 0.11 +1.0 404,155 + Synpcc7942_0414 0.12 -0.0 404,163 - Synpcc7942_0414 0.13 +1.0 404,163 - Synpcc7942_0414 0.13 -2.9 404,186 + Synpcc7942_0414 0.14 +1.0 404,186 + Synpcc7942_0414 0.14 +1.0 404,193 - Synpcc7942_0414 0.15 -1.8 404,249 + Synpcc7942_0414 0.20 +1.0 404,253 + Synpcc7942_0414 0.20 -0.6 404,261 + Synpcc7942_0414 0.21 +1.0 404,261 - Synpcc7942_0414 0.21 -0.0 404,267 - Synpcc7942_0414 0.21 +1.0 404,317 - Synpcc7942_0414 0.26 +1.0 404,392 + Synpcc7942_0414 0.32 -0.6 404,443 + Synpcc7942_0414 0.36 +1.0 404,448 + Synpcc7942_0414 0.37 +1.0 404,451 - Synpcc7942_0414 0.37 +1.0 404,461 - Synpcc7942_0414 0.38 -0.0 404,511 - Synpcc7942_0414 0.42 -0.0 404,522 + Synpcc7942_0414 0.43 -1.1 404,522 + Synpcc7942_0414 0.43 -0.6 404,523 + Synpcc7942_0414 0.43 -1.3 404,523 + Synpcc7942_0414 0.43 -0.0 404,530 - Synpcc7942_0414 0.44 -0.0 404,531 - Synpcc7942_0414 0.44 +1.0 404,568 + Synpcc7942_0414 0.47 +0.7 404,568 + Synpcc7942_0414 0.47 +1.0 404,568 + Synpcc7942_0414 0.47 -1.6 404,576 - Synpcc7942_0414 0.48 -1.8 404,667 - Synpcc7942_0414 0.55 +1.0 404,691 - Synpcc7942_0414 0.58 -0.5 404,729 + Synpcc7942_0414 0.61 -0.0 404,734 - Synpcc7942_0414 0.61 -1.5 404,742 - Synpcc7942_0414 0.62 -0.0 404,742 - Synpcc7942_0414 0.62 -0.0 404,746 + Synpcc7942_0414 0.62 +0.5 404,769 + Synpcc7942_0414 0.64 -1.1 404,772 - Synpcc7942_0414 0.64 +2.0 404,772 - Synpcc7942_0414 0.64 -1.2 404,796 - Synpcc7942_0414 0.66 -0.8 404,800 + Synpcc7942_0414 0.67 +1.0 404,805 + Synpcc7942_0414 0.67 -0.2 404,823 + Synpcc7942_0414 0.69 -0.0 404,831 - Synpcc7942_0414 0.69 +1.0 404,860 + Synpcc7942_0414 0.72 -2.0 404,953 + Synpcc7942_0414 0.80 +0.4 404,953 + Synpcc7942_0414 0.80 +1.0 404,953 + Synpcc7942_0414 0.80 -2.6 404,954 - Synpcc7942_0414 0.80 -0.0 404,958 + Synpcc7942_0414 0.80 +1.0 404,961 - Synpcc7942_0414 0.81 -0.3 404,974 - Synpcc7942_0414 0.82 -3.1 404,976 + Synpcc7942_0414 0.82 +1.0 404,978 + Synpcc7942_0414 0.82 +1.0 405,019 + Synpcc7942_0414 0.86 +0.4 405,022 - Synpcc7942_0414 0.86 +1.0 405,027 + Synpcc7942_0414 0.86 -0.6 405,076 - +0.3 405,081 + -2.2 405,081 + -2.3 405,145 + -0.8 405,183 + -1.0 405,206 + +1.6 405,206 + -0.8 405,208 + -0.6 405,208 + +1.0 405,208 + +0.2 405,208 + +0.1 405,208 + -0.6 405,208 + +0.3 405,208 + -1.2 405,208 + -2.2 405,208 + +1.3 405,208 + -2.1 405,208 + -0.5 405,208 + -0.6 405,208 + +1.0 405,208 + +0.4 405,208 + -1.9 405,216 - -1.6 405,216 - -1.0 405,216 - -1.3 405,216 - +0.8 405,216 - -0.0 405,216 - -2.3 405,216 - -1.9 405,216 - -1.9 405,216 - -1.4 405,228 - -1.1 405,228 - -1.6 405,252 + -0.8 405,278 + -1.2 405,296 - Synpcc7942_0415 0.13 -2.8 405,323 + Synpcc7942_0415 0.16 -0.2 405,337 + Synpcc7942_0415 0.17 +1.0 405,353 + Synpcc7942_0415 0.19 +2.0 405,355 - Synpcc7942_0415 0.19 -1.0 405,368 + Synpcc7942_0415 0.20 +2.3 405,378 + Synpcc7942_0415 0.21 -0.5 405,391 + Synpcc7942_0415 0.23 +2.7 405,419 + Synpcc7942_0415 0.26 +1.6 405,419 + Synpcc7942_0415 0.26 -0.4 405,437 + Synpcc7942_0415 0.28 -0.2 405,438 + Synpcc7942_0415 0.28 +1.0 405,443 + Synpcc7942_0415 0.28 -0.2 405,443 + Synpcc7942_0415 0.28 -0.5 405,446 - Synpcc7942_0415 0.28 +0.4 405,473 + Synpcc7942_0415 0.31 -0.3 405,473 + Synpcc7942_0415 0.31 -0.0 405,511 - Synpcc7942_0415 0.35 -0.5 405,538 + Synpcc7942_0415 0.38 +0.9 405,541 - Synpcc7942_0415 0.38 -0.3 405,543 + Synpcc7942_0415 0.38 -1.0 405,543 + Synpcc7942_0415 0.38 +0.9 405,546 - Synpcc7942_0415 0.39 -1.8 405,591 - Synpcc7942_0415 0.43 -0.5 405,608 - Synpcc7942_0415 0.45 +2.6 405,627 - Synpcc7942_0415 0.47 +1.1 405,634 + Synpcc7942_0415 0.48 -2.7 405,634 + Synpcc7942_0415 0.48 +0.2 405,634 + Synpcc7942_0415 0.48 -0.1 405,634 + Synpcc7942_0415 0.48 -1.4 405,642 - Synpcc7942_0415 0.48 -3.4 405,642 - Synpcc7942_0415 0.48 -0.9 405,646 + Synpcc7942_0415 0.49 +1.6 405,654 - Synpcc7942_0415 0.50 -1.1 405,654 - Synpcc7942_0415 0.50 -1.5 405,654 - Synpcc7942_0415 0.50 -0.5 405,654 - Synpcc7942_0415 0.50 +0.2 405,759 - Synpcc7942_0415 0.60 -0.0 405,759 - Synpcc7942_0415 0.60 +2.6 405,793 + Synpcc7942_0415 0.64 -1.0 405,799 - Synpcc7942_0415 0.65 -2.9 405,833 - Synpcc7942_0415 0.68 -1.2 405,833 - Synpcc7942_0415 0.68 -0.6 405,844 + Synpcc7942_0415 0.69 -1.3 405,844 + Synpcc7942_0415 0.69 -0.9 405,849 + Synpcc7942_0415 0.70 -0.0 405,850 + Synpcc7942_0415 0.70 -1.4 405,856 + Synpcc7942_0415 0.70 -1.0 405,856 + Synpcc7942_0415 0.70 +0.6 405,884 + Synpcc7942_0415 0.73 -1.3 405,884 + Synpcc7942_0415 0.73 -1.0 405,884 + Synpcc7942_0415 0.73 +1.0 405,904 + Synpcc7942_0415 0.75 +2.6 405,907 - Synpcc7942_0415 0.76 -0.0 405,918 + Synpcc7942_0415 0.77 +0.7 405,939 + Synpcc7942_0415 0.79 -0.5 405,955 + Synpcc7942_0415 0.80 -0.6 405,958 + Synpcc7942_0415 0.81 -1.1 405,958 + -0.7 405,958 + Synpcc7942_0415 0.81 +3.3 406,008 - Synpcc7942_0415 0.86 -0.7 406,051 + +2.0 406,056 + -0.8 406,056 + -0.4 406,062 + -1.9 406,090 + +1.0 406,107 - -2.0 406,107 - +1.2 406,117 - +1.0 406,131 + -1.4 406,139 - -0.9 406,153 + -1.4 406,155 + -0.7 406,155 + +1.0 406,161 - +0.7 406,163 - -1.2 406,163 - -1.1 406,165 + -1.1 406,172 + -0.8 406,173 - -1.3 406,173 - -0.0 406,180 - -1.1
Or see this region's nucleotide sequence