Experiment: Biofilm Wash/Settlers in Fresh BG11R in Test Tubes with Spin rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ycf63 and Synpcc7942_0379 are separated by 53 nucleotides Synpcc7942_0379 and Synpcc7942_0380 are separated by 21 nucleotides
Synpcc7942_0378: ycf63 - Protein of unknown function DUF140, at 372,532 to 373,326
ycf63
Synpcc7942_0379: Synpcc7942_0379 - hypothetical protein, at 373,380 to 373,763
_0379
Synpcc7942_0380: Synpcc7942_0380 - hypothetical protein, at 373,785 to 374,828
_0380
Position (kb) 373
374 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 372.385 kb on + strand at 372.393 kb on - strand at 372.395 kb on + strand at 372.395 kb on + strand at 372.409 kb on + strand at 372.409 kb on + strand at 372.409 kb on + strand at 372.484 kb on + strand at 372.489 kb on + strand at 372.492 kb on - strand at 372.497 kb on - strand at 372.511 kb on + strand at 372.516 kb on - strand at 372.520 kb on - strand at 372.534 kb on + strand at 372.544 kb on + strand at 372.544 kb on + strand at 372.552 kb on - strand at 372.552 kb on - strand at 372.552 kb on - strand at 372.562 kb on - strand at 372.642 kb on + strand, within ycf63 at 372.642 kb on + strand, within ycf63 at 372.676 kb on - strand, within ycf63 at 372.680 kb on + strand, within ycf63 at 372.687 kb on + strand, within ycf63 at 372.695 kb on - strand, within ycf63 at 372.707 kb on - strand, within ycf63 at 372.708 kb on - strand, within ycf63 at 372.717 kb on - strand, within ycf63 at 372.732 kb on - strand, within ycf63 at 372.796 kb on - strand, within ycf63 at 372.802 kb on + strand, within ycf63 at 372.876 kb on + strand, within ycf63 at 372.913 kb on + strand, within ycf63 at 372.919 kb on + strand, within ycf63 at 372.927 kb on + strand, within ycf63 at 372.931 kb on + strand, within ycf63 at 372.950 kb on - strand, within ycf63 at 372.971 kb on + strand, within ycf63 at 372.995 kb on + strand, within ycf63 at 372.995 kb on + strand, within ycf63 at 373.003 kb on - strand, within ycf63 at 373.003 kb on - strand, within ycf63 at 373.019 kb on - strand, within ycf63 at 373.119 kb on - strand, within ycf63 at 373.120 kb on + strand, within ycf63 at 373.125 kb on + strand, within ycf63 at 373.133 kb on - strand, within ycf63 at 373.179 kb on - strand, within ycf63 at 373.196 kb on + strand, within ycf63 at 373.203 kb on + strand, within ycf63 at 373.231 kb on + strand, within ycf63 at 373.231 kb on - strand, within ycf63 at 373.271 kb on - strand at 373.292 kb on - strand at 373.320 kb on + strand at 373.328 kb on - strand at 373.329 kb on - strand at 373.329 kb on - strand at 373.333 kb on - strand at 373.346 kb on + strand at 373.354 kb on - strand at 373.356 kb on + strand at 373.415 kb on + strand at 373.418 kb on - strand at 373.423 kb on - strand, within Synpcc7942_0379 at 373.440 kb on - strand, within Synpcc7942_0379 at 373.502 kb on - strand, within Synpcc7942_0379 at 373.502 kb on - strand, within Synpcc7942_0379 at 373.502 kb on - strand, within Synpcc7942_0379 at 373.502 kb on - strand, within Synpcc7942_0379 at 373.519 kb on - strand, within Synpcc7942_0379 at 373.539 kb on - strand, within Synpcc7942_0379 at 373.539 kb on - strand, within Synpcc7942_0379 at 373.561 kb on - strand, within Synpcc7942_0379 at 373.610 kb on + strand, within Synpcc7942_0379 at 373.657 kb on - strand, within Synpcc7942_0379 at 373.715 kb on - strand, within Synpcc7942_0379 at 373.725 kb on - strand at 373.752 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm Wash/Settlers in Fresh BG11R in Test Tubes with Spin rep 1 remove 372,385 + +2.8 372,393 - -0.9 372,395 + +2.0 372,395 + -1.1 372,409 + -2.1 372,409 + -0.5 372,409 + +2.0 372,484 + +2.0 372,489 + -1.2 372,492 - -0.7 372,497 - -0.5 372,511 + -0.6 372,516 - +1.0 372,520 - +1.6 372,534 + -0.8 372,544 + -1.2 372,544 + -0.9 372,552 - +0.7 372,552 - +0.1 372,552 - -0.2 372,562 - -0.6 372,642 + ycf63 Synpcc7942_0378 0.14 +1.0 372,642 + ycf63 Synpcc7942_0378 0.14 +3.0 372,676 - ycf63 Synpcc7942_0378 0.18 -0.0 372,680 + ycf63 Synpcc7942_0378 0.19 +2.3 372,687 + ycf63 Synpcc7942_0378 0.19 +1.0 372,695 - ycf63 Synpcc7942_0378 0.21 +1.0 372,707 - ycf63 Synpcc7942_0378 0.22 -1.2 372,708 - ycf63 Synpcc7942_0378 0.22 +0.4 372,717 - ycf63 Synpcc7942_0378 0.23 +1.0 372,732 - ycf63 Synpcc7942_0378 0.25 +1.6 372,796 - ycf63 Synpcc7942_0378 0.33 -1.5 372,802 + ycf63 Synpcc7942_0378 0.34 +0.4 372,876 + ycf63 Synpcc7942_0378 0.43 -1.5 372,913 + ycf63 Synpcc7942_0378 0.48 -0.0 372,919 + ycf63 Synpcc7942_0378 0.49 -0.6 372,927 + ycf63 Synpcc7942_0378 0.50 +1.0 372,931 + ycf63 Synpcc7942_0378 0.50 +1.0 372,950 - ycf63 Synpcc7942_0378 0.53 +2.0 372,971 + ycf63 Synpcc7942_0378 0.55 +1.0 372,995 + ycf63 Synpcc7942_0378 0.58 +2.7 372,995 + ycf63 Synpcc7942_0378 0.58 -0.0 373,003 - ycf63 Synpcc7942_0378 0.59 +0.2 373,003 - ycf63 Synpcc7942_0378 0.59 +1.0 373,019 - ycf63 Synpcc7942_0378 0.61 -0.4 373,119 - ycf63 Synpcc7942_0378 0.74 +1.0 373,120 + ycf63 Synpcc7942_0378 0.74 +1.0 373,125 + ycf63 Synpcc7942_0378 0.75 -1.6 373,133 - ycf63 Synpcc7942_0378 0.76 +1.0 373,179 - ycf63 Synpcc7942_0378 0.81 -0.0 373,196 + ycf63 Synpcc7942_0378 0.84 -0.8 373,203 + ycf63 Synpcc7942_0378 0.84 -0.0 373,231 + ycf63 Synpcc7942_0378 0.88 -0.6 373,231 - ycf63 Synpcc7942_0378 0.88 +1.0 373,271 - -0.0 373,292 - -0.0 373,320 + -0.5 373,328 - +1.8 373,329 - -0.6 373,329 - -0.6 373,333 - +0.6 373,346 + -2.8 373,354 - -0.6 373,356 + +1.0 373,415 + +1.0 373,418 - +2.0 373,423 - Synpcc7942_0379 0.11 +1.0 373,440 - Synpcc7942_0379 0.16 +1.0 373,502 - Synpcc7942_0379 0.32 +1.0 373,502 - Synpcc7942_0379 0.32 +1.0 373,502 - Synpcc7942_0379 0.32 -0.3 373,502 - Synpcc7942_0379 0.32 -0.5 373,519 - Synpcc7942_0379 0.36 +2.0 373,539 - Synpcc7942_0379 0.41 -0.7 373,539 - Synpcc7942_0379 0.41 -3.0 373,561 - Synpcc7942_0379 0.47 +1.0 373,610 + Synpcc7942_0379 0.60 +0.4 373,657 - Synpcc7942_0379 0.72 +0.3 373,715 - Synpcc7942_0379 0.87 +3.0 373,725 - -0.3 373,752 - -0.2
Or see this region's nucleotide sequence