Experiment: Biofilm Wash/Settlers in Fresh BG11R in Test Tubes with Spin rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ictB and dc13 are separated by 30 nucleotides dc13 and Synpcc7942_0359 are separated by 75 nucleotides
Synpcc7942_0357: ictB - Inorganic carbon transporter, at 349,875 to 351,278
ictB
Synpcc7942_0358: dc13 - tRNA (guanine-N(7))-methyltransferase, at 351,309 to 351,950
dc13
Synpcc7942_0359: Synpcc7942_0359 - hypothetical protein, at 352,026 to 353,207
_0359
Position (kb) 351
352 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 351.282 kb on - strand at 351.287 kb on + strand at 351.299 kb on + strand at 351.300 kb on + strand at 351.305 kb on - strand at 351.307 kb on + strand at 351.331 kb on - strand at 351.340 kb on + strand at 351.343 kb on - strand at 351.456 kb on + strand, within dc13 at 351.505 kb on - strand, within dc13 at 351.506 kb on + strand, within dc13 at 351.514 kb on - strand, within dc13 at 351.529 kb on + strand, within dc13 at 351.613 kb on - strand, within dc13 at 351.618 kb on - strand, within dc13 at 351.618 kb on - strand, within dc13 at 351.678 kb on + strand, within dc13 at 351.704 kb on + strand, within dc13 at 351.704 kb on + strand, within dc13 at 351.710 kb on - strand at 351.788 kb on - strand, within dc13 at 351.788 kb on - strand, within dc13 at 351.789 kb on - strand at 351.867 kb on - strand, within dc13 at 351.867 kb on - strand, within dc13 at 351.867 kb on - strand, within dc13 at 351.869 kb on + strand, within dc13 at 351.874 kb on - strand, within dc13 at 351.893 kb on - strand at 351.894 kb on - strand at 351.927 kb on - strand at 351.935 kb on + strand at 351.960 kb on + strand at 351.981 kb on + strand at 351.983 kb on - strand at 351.986 kb on + strand at 351.989 kb on - strand at 351.999 kb on - strand at 352.011 kb on + strand at 352.019 kb on - strand at 352.031 kb on - strand at 352.052 kb on + strand at 352.052 kb on + strand at 352.052 kb on + strand at 352.060 kb on - strand at 352.060 kb on - strand at 352.074 kb on - strand at 352.126 kb on + strand at 352.145 kb on + strand, within Synpcc7942_0359 at 352.145 kb on + strand, within Synpcc7942_0359 at 352.149 kb on - strand, within Synpcc7942_0359 at 352.180 kb on + strand, within Synpcc7942_0359 at 352.197 kb on + strand, within Synpcc7942_0359 at 352.206 kb on - strand, within Synpcc7942_0359 at 352.259 kb on + strand, within Synpcc7942_0359 at 352.267 kb on - strand, within Synpcc7942_0359 at 352.268 kb on + strand, within Synpcc7942_0359 at 352.268 kb on + strand, within Synpcc7942_0359 at 352.273 kb on + strand, within Synpcc7942_0359 at 352.276 kb on - strand, within Synpcc7942_0359 at 352.277 kb on - strand, within Synpcc7942_0359 at 352.281 kb on - strand, within Synpcc7942_0359 at 352.281 kb on - strand, within Synpcc7942_0359 at 352.324 kb on + strand, within Synpcc7942_0359 at 352.339 kb on + strand, within Synpcc7942_0359 at 352.394 kb on - strand, within Synpcc7942_0359 at 352.402 kb on - strand, within Synpcc7942_0359 at 352.413 kb on + strand, within Synpcc7942_0359 at 352.533 kb on + strand, within Synpcc7942_0359 at 352.533 kb on + strand, within Synpcc7942_0359 at 352.541 kb on - strand, within Synpcc7942_0359 at 352.541 kb on - strand, within Synpcc7942_0359 at 352.546 kb on - strand, within Synpcc7942_0359 at 352.563 kb on + strand, within Synpcc7942_0359 at 352.563 kb on + strand, within Synpcc7942_0359 at 352.563 kb on + strand, within Synpcc7942_0359 at 352.571 kb on - strand, within Synpcc7942_0359 at 352.571 kb on - strand, within Synpcc7942_0359 at 352.590 kb on - strand, within Synpcc7942_0359 at 352.607 kb on + strand, within Synpcc7942_0359 at 352.607 kb on + strand, within Synpcc7942_0359 at 352.664 kb on - strand, within Synpcc7942_0359 at 352.665 kb on + strand, within Synpcc7942_0359 at 352.670 kb on + strand, within Synpcc7942_0359 at 352.683 kb on - strand, within Synpcc7942_0359 at 352.692 kb on + strand, within Synpcc7942_0359 at 352.723 kb on + strand, within Synpcc7942_0359 at 352.728 kb on - strand, within Synpcc7942_0359 at 352.736 kb on - strand, within Synpcc7942_0359 at 352.753 kb on + strand, within Synpcc7942_0359 at 352.754 kb on + strand, within Synpcc7942_0359 at 352.769 kb on + strand, within Synpcc7942_0359 at 352.769 kb on + strand, within Synpcc7942_0359 at 352.777 kb on - strand, within Synpcc7942_0359 at 352.785 kb on - strand, within Synpcc7942_0359 at 352.786 kb on - strand, within Synpcc7942_0359 at 352.874 kb on + strand, within Synpcc7942_0359 at 352.895 kb on + strand, within Synpcc7942_0359 at 352.898 kb on - strand, within Synpcc7942_0359
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm Wash/Settlers in Fresh BG11R in Test Tubes with Spin rep 1 remove 351,282 - +1.0 351,287 + -0.4 351,299 + -1.0 351,300 + +1.4 351,305 - +0.4 351,307 + -1.9 351,331 - +0.2 351,340 + -0.3 351,343 - -0.9 351,456 + dc13 Synpcc7942_0358 0.23 -0.0 351,505 - dc13 Synpcc7942_0358 0.31 -1.0 351,506 + dc13 Synpcc7942_0358 0.31 -1.3 351,514 - dc13 Synpcc7942_0358 0.32 -0.6 351,529 + dc13 Synpcc7942_0358 0.34 -0.0 351,613 - dc13 Synpcc7942_0358 0.47 -1.6 351,618 - dc13 Synpcc7942_0358 0.48 -0.6 351,618 - dc13 Synpcc7942_0358 0.48 -0.4 351,678 + dc13 Synpcc7942_0358 0.57 -3.1 351,704 + dc13 Synpcc7942_0358 0.62 -0.8 351,704 + dc13 Synpcc7942_0358 0.62 -0.2 351,710 - +1.0 351,788 - dc13 Synpcc7942_0358 0.75 -0.4 351,788 - dc13 Synpcc7942_0358 0.75 -1.4 351,789 - -1.6 351,867 - dc13 Synpcc7942_0358 0.87 -0.9 351,867 - dc13 Synpcc7942_0358 0.87 -2.0 351,867 - dc13 Synpcc7942_0358 0.87 +1.0 351,869 + dc13 Synpcc7942_0358 0.87 -1.0 351,874 - dc13 Synpcc7942_0358 0.88 -0.6 351,893 - +0.7 351,894 - +0.4 351,927 - +0.4 351,935 + -2.4 351,960 + -2.0 351,981 + +1.0 351,983 - -0.7 351,986 + -0.2 351,989 - -0.0 351,999 - +1.0 352,011 + -0.9 352,019 - -1.3 352,031 - -0.7 352,052 + -2.2 352,052 + -1.5 352,052 + -1.3 352,060 - +0.5 352,060 - -1.9 352,074 - -0.0 352,126 + -1.1 352,145 + Synpcc7942_0359 0.10 -0.0 352,145 + Synpcc7942_0359 0.10 +1.2 352,149 - Synpcc7942_0359 0.10 -0.2 352,180 + Synpcc7942_0359 0.13 -1.8 352,197 + Synpcc7942_0359 0.14 -1.6 352,206 - Synpcc7942_0359 0.15 -0.5 352,259 + Synpcc7942_0359 0.20 -1.2 352,267 - Synpcc7942_0359 0.20 -0.1 352,268 + Synpcc7942_0359 0.20 -2.1 352,268 + Synpcc7942_0359 0.20 +1.0 352,273 + Synpcc7942_0359 0.21 -1.7 352,276 - Synpcc7942_0359 0.21 -0.0 352,277 - Synpcc7942_0359 0.21 -0.2 352,281 - Synpcc7942_0359 0.22 +1.2 352,281 - Synpcc7942_0359 0.22 -2.0 352,324 + Synpcc7942_0359 0.25 -2.1 352,339 + Synpcc7942_0359 0.26 -2.0 352,394 - Synpcc7942_0359 0.31 +0.1 352,402 - Synpcc7942_0359 0.32 -1.4 352,413 + Synpcc7942_0359 0.33 +2.0 352,533 + Synpcc7942_0359 0.43 -0.6 352,533 + Synpcc7942_0359 0.43 -0.7 352,541 - Synpcc7942_0359 0.44 -0.8 352,541 - Synpcc7942_0359 0.44 -1.4 352,546 - Synpcc7942_0359 0.44 -2.5 352,563 + Synpcc7942_0359 0.45 -0.7 352,563 + Synpcc7942_0359 0.45 -0.8 352,563 + Synpcc7942_0359 0.45 -0.0 352,571 - Synpcc7942_0359 0.46 -1.0 352,571 - Synpcc7942_0359 0.46 -0.6 352,590 - Synpcc7942_0359 0.48 +1.2 352,607 + Synpcc7942_0359 0.49 -0.6 352,607 + Synpcc7942_0359 0.49 -0.6 352,664 - Synpcc7942_0359 0.54 -1.2 352,665 + Synpcc7942_0359 0.54 -0.5 352,670 + Synpcc7942_0359 0.54 +1.7 352,683 - Synpcc7942_0359 0.56 +1.6 352,692 + Synpcc7942_0359 0.56 -3.1 352,723 + Synpcc7942_0359 0.59 +3.6 352,728 - Synpcc7942_0359 0.59 -1.0 352,736 - Synpcc7942_0359 0.60 +3.6 352,753 + Synpcc7942_0359 0.62 +2.3 352,754 + Synpcc7942_0359 0.62 -0.9 352,769 + Synpcc7942_0359 0.63 -2.8 352,769 + Synpcc7942_0359 0.63 -2.3 352,777 - Synpcc7942_0359 0.64 -1.7 352,785 - Synpcc7942_0359 0.64 -1.0 352,786 - Synpcc7942_0359 0.64 +1.1 352,874 + Synpcc7942_0359 0.72 -2.3 352,895 + Synpcc7942_0359 0.74 -2.0 352,898 - Synpcc7942_0359 0.74 +0.6
Or see this region's nucleotide sequence