Experiment: Biofilm Wash/Settlers in Fresh BG11R in Test Tubes with Spin rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0013 and Synpcc7942_0014 are separated by 38 nucleotides Synpcc7942_0014 and Synpcc7942_0015 are separated by 165 nucleotides
Synpcc7942_0013: Synpcc7942_0013 - hypothetical protein, at 12,321 to 13,028
_0013
Synpcc7942_0014: Synpcc7942_0014 - hypothetical protein, at 13,067 to 13,411
_0014
Synpcc7942_0015: Synpcc7942_0015 - putative hydroxylase, at 13,577 to 14,248
_0015
Position (kb) 13
14 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 12.074 kb on + strand at 12.112 kb on + strand at 12.120 kb on - strand at 12.120 kb on - strand at 12.127 kb on + strand at 12.135 kb on - strand at 12.177 kb on + strand at 12.185 kb on - strand at 12.191 kb on + strand at 12.201 kb on + strand at 12.201 kb on + strand at 12.209 kb on - strand at 12.209 kb on - strand at 12.221 kb on + strand at 12.353 kb on + strand at 12.360 kb on + strand at 12.360 kb on + strand at 12.596 kb on + strand, within Synpcc7942_0013 at 12.604 kb on - strand, within Synpcc7942_0013 at 12.625 kb on + strand, within Synpcc7942_0013 at 12.641 kb on - strand, within Synpcc7942_0013 at 12.641 kb on - strand, within Synpcc7942_0013 at 12.642 kb on - strand, within Synpcc7942_0013 at 12.669 kb on + strand, within Synpcc7942_0013 at 12.669 kb on + strand, within Synpcc7942_0013 at 12.769 kb on - strand, within Synpcc7942_0013 at 12.789 kb on - strand, within Synpcc7942_0013 at 12.862 kb on - strand, within Synpcc7942_0013 at 12.875 kb on + strand, within Synpcc7942_0013 at 12.960 kb on + strand at 12.960 kb on + strand at 12.960 kb on + strand at 12.960 kb on + strand at 12.960 kb on + strand at 12.968 kb on - strand at 13.021 kb on + strand at 13.021 kb on + strand at 13.060 kb on - strand at 13.082 kb on - strand at 13.115 kb on - strand, within Synpcc7942_0014 at 13.115 kb on - strand, within Synpcc7942_0014 at 13.461 kb on + strand at 13.461 kb on + strand at 13.462 kb on - strand at 13.469 kb on - strand at 13.472 kb on + strand at 13.481 kb on - strand at 13.499 kb on - strand at 13.503 kb on + strand at 13.511 kb on - strand at 13.511 kb on - strand at 13.541 kb on + strand at 13.547 kb on - strand at 13.549 kb on - strand at 13.553 kb on - strand at 13.557 kb on - strand at 13.570 kb on - strand at 13.574 kb on + strand at 13.574 kb on + strand at 13.574 kb on + strand at 13.574 kb on + strand at 13.574 kb on + strand at 13.574 kb on + strand at 13.574 kb on + strand at 13.574 kb on + strand at 13.574 kb on + strand at 13.574 kb on + strand at 13.574 kb on + strand at 13.579 kb on + strand at 13.582 kb on - strand at 13.582 kb on - strand at 13.582 kb on - strand at 13.582 kb on - strand at 13.582 kb on - strand at 13.582 kb on - strand at 13.582 kb on - strand at 13.587 kb on - strand at 13.637 kb on + strand at 13.645 kb on - strand, within Synpcc7942_0015 at 13.679 kb on - strand, within Synpcc7942_0015 at 13.735 kb on - strand, within Synpcc7942_0015 at 13.749 kb on + strand, within Synpcc7942_0015 at 13.749 kb on + strand, within Synpcc7942_0015 at 13.776 kb on - strand, within Synpcc7942_0015 at 13.776 kb on - strand, within Synpcc7942_0015 at 13.776 kb on - strand at 13.778 kb on + strand, within Synpcc7942_0015 at 13.781 kb on - strand, within Synpcc7942_0015 at 13.783 kb on + strand, within Synpcc7942_0015 at 13.786 kb on - strand, within Synpcc7942_0015 at 13.786 kb on - strand, within Synpcc7942_0015 at 13.786 kb on - strand, within Synpcc7942_0015 at 13.791 kb on - strand, within Synpcc7942_0015 at 13.802 kb on - strand, within Synpcc7942_0015 at 13.824 kb on + strand, within Synpcc7942_0015 at 13.829 kb on + strand, within Synpcc7942_0015 at 13.829 kb on + strand, within Synpcc7942_0015 at 13.832 kb on - strand, within Synpcc7942_0015 at 13.834 kb on + strand, within Synpcc7942_0015 at 13.834 kb on + strand, within Synpcc7942_0015 at 13.834 kb on + strand, within Synpcc7942_0015 at 13.842 kb on - strand, within Synpcc7942_0015 at 13.842 kb on - strand, within Synpcc7942_0015 at 13.842 kb on - strand, within Synpcc7942_0015 at 13.842 kb on - strand, within Synpcc7942_0015 at 13.846 kb on + strand, within Synpcc7942_0015 at 13.848 kb on + strand, within Synpcc7942_0015 at 13.856 kb on + strand, within Synpcc7942_0015 at 13.856 kb on + strand, within Synpcc7942_0015 at 13.864 kb on - strand, within Synpcc7942_0015 at 13.864 kb on - strand, within Synpcc7942_0015 at 13.869 kb on + strand, within Synpcc7942_0015 at 13.870 kb on - strand, within Synpcc7942_0015 at 13.870 kb on - strand, within Synpcc7942_0015 at 13.879 kb on + strand, within Synpcc7942_0015 at 13.907 kb on + strand, within Synpcc7942_0015 at 13.910 kb on - strand, within Synpcc7942_0015 at 13.915 kb on - strand, within Synpcc7942_0015 at 13.967 kb on + strand, within Synpcc7942_0015 at 13.983 kb on + strand, within Synpcc7942_0015 at 13.991 kb on - strand, within Synpcc7942_0015 at 14.016 kb on + strand, within Synpcc7942_0015 at 14.022 kb on + strand, within Synpcc7942_0015 at 14.034 kb on + strand, within Synpcc7942_0015 at 14.042 kb on - strand, within Synpcc7942_0015 at 14.181 kb on - strand at 14.182 kb on + strand at 14.182 kb on + strand at 14.192 kb on + strand at 14.200 kb on - strand at 14.207 kb on + strand at 14.215 kb on - strand at 14.225 kb on - strand at 14.228 kb on + strand at 14.236 kb on - strand at 14.364 kb on + strand at 14.372 kb on - strand at 14.383 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm Wash/Settlers in Fresh BG11R in Test Tubes with Spin rep 1 remove 12,074 + +0.5 12,112 + +1.0 12,120 - +0.8 12,120 - +1.3 12,127 + -0.5 12,135 - +0.4 12,177 + -1.2 12,185 - -0.3 12,191 + -0.8 12,201 + +0.3 12,201 + -0.6 12,209 - -0.8 12,209 - +1.0 12,221 + -0.2 12,353 + -1.7 12,360 + -2.4 12,360 + -1.3 12,596 + Synpcc7942_0013 0.39 -1.4 12,604 - Synpcc7942_0013 0.40 -0.2 12,625 + Synpcc7942_0013 0.43 +1.2 12,641 - Synpcc7942_0013 0.45 -1.5 12,641 - Synpcc7942_0013 0.45 -1.0 12,642 - Synpcc7942_0013 0.45 -1.9 12,669 + Synpcc7942_0013 0.49 -0.2 12,669 + Synpcc7942_0013 0.49 +1.5 12,769 - Synpcc7942_0013 0.63 -1.4 12,789 - Synpcc7942_0013 0.66 +0.8 12,862 - Synpcc7942_0013 0.76 -1.6 12,875 + Synpcc7942_0013 0.78 -1.5 12,960 + +1.0 12,960 + -1.0 12,960 + -0.8 12,960 + +1.0 12,960 + -2.3 12,968 - +0.8 13,021 + +3.0 13,021 + +2.0 13,060 - +0.4 13,082 - -2.2 13,115 - Synpcc7942_0014 0.14 +0.4 13,115 - Synpcc7942_0014 0.14 -1.8 13,461 + +0.5 13,461 + +1.0 13,462 - +0.4 13,469 - -2.7 13,472 + -3.5 13,481 - -0.2 13,499 - +1.4 13,503 + -3.7 13,511 - +2.3 13,511 - -0.5 13,541 + -0.9 13,547 - -0.6 13,549 - -0.8 13,553 - +2.6 13,557 - -1.1 13,570 - -2.7 13,574 + -1.2 13,574 + +0.2 13,574 + -0.0 13,574 + -0.0 13,574 + +1.0 13,574 + -0.8 13,574 + -1.6 13,574 + +0.4 13,574 + -0.8 13,574 + +3.2 13,574 + -0.8 13,579 + +1.0 13,582 - -0.1 13,582 - -1.7 13,582 - -2.8 13,582 - -2.0 13,582 - -0.7 13,582 - -1.6 13,582 - -2.0 13,587 - -1.5 13,637 + -0.6 13,645 - Synpcc7942_0015 0.10 -0.3 13,679 - Synpcc7942_0015 0.15 -1.0 13,735 - Synpcc7942_0015 0.24 +0.5 13,749 + Synpcc7942_0015 0.26 -0.6 13,749 + Synpcc7942_0015 0.26 -1.3 13,776 - Synpcc7942_0015 0.30 +0.7 13,776 - Synpcc7942_0015 0.30 -1.3 13,776 - -0.8 13,778 + Synpcc7942_0015 0.30 +1.0 13,781 - Synpcc7942_0015 0.30 -0.9 13,783 + Synpcc7942_0015 0.31 +1.0 13,786 - Synpcc7942_0015 0.31 -0.9 13,786 - Synpcc7942_0015 0.31 +0.5 13,786 - Synpcc7942_0015 0.31 +1.0 13,791 - Synpcc7942_0015 0.32 -0.6 13,802 - Synpcc7942_0015 0.33 +0.4 13,824 + Synpcc7942_0015 0.37 -0.9 13,829 + Synpcc7942_0015 0.38 -1.3 13,829 + Synpcc7942_0015 0.38 +0.3 13,832 - Synpcc7942_0015 0.38 -0.6 13,834 + Synpcc7942_0015 0.38 -1.3 13,834 + Synpcc7942_0015 0.38 -1.5 13,834 + Synpcc7942_0015 0.38 -0.0 13,842 - Synpcc7942_0015 0.39 +1.0 13,842 - Synpcc7942_0015 0.39 +1.2 13,842 - Synpcc7942_0015 0.39 -0.8 13,842 - Synpcc7942_0015 0.39 -1.2 13,846 + Synpcc7942_0015 0.40 -0.2 13,848 + Synpcc7942_0015 0.40 +2.0 13,856 + Synpcc7942_0015 0.42 -0.2 13,856 + Synpcc7942_0015 0.42 -2.5 13,864 - Synpcc7942_0015 0.43 -1.3 13,864 - Synpcc7942_0015 0.43 -0.3 13,869 + Synpcc7942_0015 0.43 -1.8 13,870 - Synpcc7942_0015 0.44 -0.5 13,870 - Synpcc7942_0015 0.44 -1.6 13,879 + Synpcc7942_0015 0.45 -0.3 13,907 + Synpcc7942_0015 0.49 +0.3 13,910 - Synpcc7942_0015 0.50 -1.2 13,915 - Synpcc7942_0015 0.50 +3.0 13,967 + Synpcc7942_0015 0.58 +1.0 13,983 + Synpcc7942_0015 0.60 -1.0 13,991 - Synpcc7942_0015 0.62 -0.2 14,016 + Synpcc7942_0015 0.65 -0.0 14,022 + Synpcc7942_0015 0.66 -2.4 14,034 + Synpcc7942_0015 0.68 +1.0 14,042 - Synpcc7942_0015 0.69 -0.6 14,181 - -1.5 14,182 + -0.2 14,182 + +0.2 14,192 + -0.5 14,200 - +1.0 14,207 + +3.8 14,215 - -0.3 14,225 - -0.6 14,228 + -1.8 14,236 - +0.3 14,364 + +1.0 14,372 - +1.4 14,383 - -0.0
Or see this region's nucleotide sequence