Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06578 and H281DRAFT_06579 are separated by 99 nucleotides H281DRAFT_06579 and H281DRAFT_06580 are separated by 15 nucleotides
H281DRAFT_06578: H281DRAFT_06578 - NADP-dependent 3-hydroxy acid dehydrogenase YdfG, at 19,716 to 20,573
_06578
H281DRAFT_06579: H281DRAFT_06579 - Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase), at 20,673 to 21,695
_06579
H281DRAFT_06580: H281DRAFT_06580 - DNA-binding transcriptional regulator, LysR family, at 21,711 to 22,622
_06580
Position (kb) 20
21
22 Strain fitness (log2 ratio) -2
-1
0
1
2 at 19.721 kb on + strand at 19.721 kb on + strand at 19.722 kb on - strand at 19.758 kb on - strand at 19.983 kb on - strand, within H281DRAFT_06578 at 20.046 kb on + strand, within H281DRAFT_06578 at 20.046 kb on + strand, within H281DRAFT_06578 at 20.047 kb on - strand at 20.297 kb on + strand, within H281DRAFT_06578 at 20.298 kb on - strand, within H281DRAFT_06578 at 20.338 kb on - strand, within H281DRAFT_06578 at 20.511 kb on + strand at 20.511 kb on + strand at 20.512 kb on - strand at 20.512 kb on - strand at 20.512 kb on - strand at 20.937 kb on + strand, within H281DRAFT_06579 at 20.937 kb on + strand, within H281DRAFT_06579 at 20.937 kb on + strand, within H281DRAFT_06579 at 20.937 kb on + strand, within H281DRAFT_06579 at 20.937 kb on + strand, within H281DRAFT_06579 at 20.937 kb on + strand, within H281DRAFT_06579 at 20.937 kb on + strand, within H281DRAFT_06579 at 20.938 kb on - strand, within H281DRAFT_06579 at 21.040 kb on - strand, within H281DRAFT_06579 at 21.108 kb on + strand, within H281DRAFT_06579 at 21.109 kb on - strand, within H281DRAFT_06579 at 21.109 kb on - strand, within H281DRAFT_06579 at 21.450 kb on + strand, within H281DRAFT_06579 at 21.451 kb on - strand, within H281DRAFT_06579 at 21.528 kb on + strand, within H281DRAFT_06579 at 21.633 kb on + strand at 21.939 kb on + strand, within H281DRAFT_06580 at 21.940 kb on - strand, within H281DRAFT_06580 at 21.940 kb on - strand, within H281DRAFT_06580 at 21.978 kb on + strand, within H281DRAFT_06580 at 22.103 kb on - strand, within H281DRAFT_06580 at 22.238 kb on - strand, within H281DRAFT_06580 at 22.332 kb on + strand, within H281DRAFT_06580 at 22.333 kb on - strand, within H281DRAFT_06580 at 22.384 kb on + strand, within H281DRAFT_06580 at 22.396 kb on - strand, within H281DRAFT_06580 at 22.667 kb on - strand at 22.667 kb on - strand at 22.667 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 19,721 + +0.2 19,721 + -0.0 19,722 - -0.9 19,758 - +1.0 19,983 - H281DRAFT_06578 0.31 +2.3 20,046 + H281DRAFT_06578 0.38 +0.6 20,046 + H281DRAFT_06578 0.38 +0.9 20,047 - +2.6 20,297 + H281DRAFT_06578 0.68 +0.4 20,298 - H281DRAFT_06578 0.68 +0.6 20,338 - H281DRAFT_06578 0.72 +0.4 20,511 + -0.7 20,511 + -0.1 20,512 - +0.3 20,512 - -0.1 20,512 - +0.1 20,937 + H281DRAFT_06579 0.26 +0.2 20,937 + H281DRAFT_06579 0.26 +0.2 20,937 + H281DRAFT_06579 0.26 -0.5 20,937 + H281DRAFT_06579 0.26 +0.0 20,937 + H281DRAFT_06579 0.26 +0.4 20,937 + H281DRAFT_06579 0.26 +0.6 20,937 + H281DRAFT_06579 0.26 -0.3 20,938 - H281DRAFT_06579 0.26 -0.4 21,040 - H281DRAFT_06579 0.36 +0.2 21,108 + H281DRAFT_06579 0.43 -0.7 21,109 - H281DRAFT_06579 0.43 -0.1 21,109 - H281DRAFT_06579 0.43 -0.4 21,450 + H281DRAFT_06579 0.76 +1.0 21,451 - H281DRAFT_06579 0.76 +0.1 21,528 + H281DRAFT_06579 0.84 +1.3 21,633 + -0.8 21,939 + H281DRAFT_06580 0.25 +0.7 21,940 - H281DRAFT_06580 0.25 -0.1 21,940 - H281DRAFT_06580 0.25 -0.2 21,978 + H281DRAFT_06580 0.29 -0.4 22,103 - H281DRAFT_06580 0.43 -0.0 22,238 - H281DRAFT_06580 0.58 -0.1 22,332 + H281DRAFT_06580 0.68 -0.9 22,333 - H281DRAFT_06580 0.68 +0.2 22,384 + H281DRAFT_06580 0.74 -1.8 22,396 - H281DRAFT_06580 0.75 +0.3 22,667 - +0.2 22,667 - +0.2 22,667 - +0.4
Or see this region's nucleotide sequence