Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05875 and H281DRAFT_05876 are separated by 76 nucleotides H281DRAFT_05876 and H281DRAFT_05877 are separated by 83 nucleotides H281DRAFT_05877 and H281DRAFT_05878 overlap by 4 nucleotides
H281DRAFT_05875: H281DRAFT_05875 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 10,798 to 12,258
_05875
H281DRAFT_05876: H281DRAFT_05876 - transcriptional regulator, TetR family, at 12,335 to 12,955
_05876
H281DRAFT_05877: H281DRAFT_05877 - RND family efflux transporter, MFP subunit, at 13,039 to 14,154
_05877
H281DRAFT_05878: H281DRAFT_05878 - Multidrug efflux pump subunit AcrB, at 14,151 to 17,288
_05878
Position (kb) 13
14
15 Strain fitness (log2 ratio) -2
-1
0
1 at 12.134 kb on - strand at 12.186 kb on - strand at 12.497 kb on + strand, within H281DRAFT_05876 at 12.497 kb on + strand, within H281DRAFT_05876 at 12.500 kb on - strand, within H281DRAFT_05876 at 12.503 kb on + strand, within H281DRAFT_05876 at 12.503 kb on + strand, within H281DRAFT_05876 at 12.503 kb on + strand, within H281DRAFT_05876 at 12.568 kb on - strand, within H281DRAFT_05876 at 12.622 kb on - strand at 12.686 kb on + strand, within H281DRAFT_05876 at 12.885 kb on - strand, within H281DRAFT_05876 at 13.454 kb on - strand, within H281DRAFT_05877 at 13.531 kb on - strand, within H281DRAFT_05877 at 13.810 kb on + strand, within H281DRAFT_05877 at 14.413 kb on - strand at 14.721 kb on + strand, within H281DRAFT_05878 at 14.721 kb on + strand, within H281DRAFT_05878
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 12,134 - +0.3 12,186 - +0.3 12,497 + H281DRAFT_05876 0.26 -0.2 12,497 + H281DRAFT_05876 0.26 -0.3 12,500 - H281DRAFT_05876 0.27 -0.0 12,503 + H281DRAFT_05876 0.27 -1.0 12,503 + H281DRAFT_05876 0.27 -1.6 12,503 + H281DRAFT_05876 0.27 +0.2 12,568 - H281DRAFT_05876 0.38 -1.2 12,622 - -1.3 12,686 + H281DRAFT_05876 0.57 -2.0 12,885 - H281DRAFT_05876 0.89 -1.0 13,454 - H281DRAFT_05877 0.37 -0.2 13,531 - H281DRAFT_05877 0.44 +0.3 13,810 + H281DRAFT_05877 0.69 -0.6 14,413 - -1.9 14,721 + H281DRAFT_05878 0.18 -0.1 14,721 + H281DRAFT_05878 0.18 -0.5
Or see this region's nucleotide sequence