Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05153

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05151 and H281DRAFT_05152 are separated by 117 nucleotidesH281DRAFT_05152 and H281DRAFT_05153 are separated by 83 nucleotidesH281DRAFT_05153 and H281DRAFT_05154 are separated by 49 nucleotides H281DRAFT_05151: H281DRAFT_05151 - hypothetical protein, at 105,507 to 105,671 _05151 H281DRAFT_05152: H281DRAFT_05152 - protein of unknown function (DUF1992), at 105,789 to 106,220 _05152 H281DRAFT_05153: H281DRAFT_05153 - tRNA(adenine34) deaminase, at 106,304 to 106,987 _05153 H281DRAFT_05154: H281DRAFT_05154 - murein tetrapeptidase LD-carboxypeptidase (EC:3.4.17.13). Serine peptidase. MEROPS family S66, at 107,037 to 107,963 _05154 Position (kb) 106 107Strain fitness (log2 ratio) -1 0 1 2at 105.330 kb on - strandat 105.374 kb on + strandat 105.375 kb on - strandat 105.391 kb on + strandat 105.392 kb on - strandat 105.484 kb on + strandat 105.485 kb on - strandat 105.485 kb on - strandat 105.577 kb on + strand, within H281DRAFT_05151at 105.590 kb on + strand, within H281DRAFT_05151at 105.755 kb on + strandat 105.756 kb on - strandat 105.776 kb on + strandat 105.821 kb on + strandat 106.315 kb on + strandat 107.032 kb on + strandat 107.152 kb on + strand, within H281DRAFT_05154at 107.153 kb on - strand, within H281DRAFT_05154at 107.153 kb on - strand, within H281DRAFT_05154at 107.615 kb on + strand, within H281DRAFT_05154at 107.616 kb on - strand, within H281DRAFT_05154at 107.692 kb on - strand, within H281DRAFT_05154at 107.877 kb on - strandat 107.877 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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105,330 - -0.4
105,374 + +0.0
105,375 - +0.7
105,391 + +0.2
105,392 - +0.1
105,484 + +0.5
105,485 - +0.3
105,485 - +0.2
105,577 + H281DRAFT_05151 0.42 +0.3
105,590 + H281DRAFT_05151 0.50 +0.3
105,755 + -0.0
105,756 - +0.4
105,776 + +0.0
105,821 + +0.4
106,315 + -0.2
107,032 + -0.9
107,152 + H281DRAFT_05154 0.12 +2.0
107,153 - H281DRAFT_05154 0.13 +0.5
107,153 - H281DRAFT_05154 0.13 +0.1
107,615 + H281DRAFT_05154 0.62 -0.2
107,616 - H281DRAFT_05154 0.62 +0.0
107,692 - H281DRAFT_05154 0.71 +0.5
107,877 - +0.2
107,877 - +0.2

Or see this region's nucleotide sequence