Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04092 and H281DRAFT_04093 overlap by 4 nucleotides H281DRAFT_04093 and H281DRAFT_04094 overlap by 4 nucleotides
H281DRAFT_04092: H281DRAFT_04092 - peptide/nickel transport system permease protein, at 199,039 to 200,046
_04092
H281DRAFT_04093: H281DRAFT_04093 - peptide/nickel transport system permease protein, at 200,043 to 200,912
_04093
H281DRAFT_04094: H281DRAFT_04094 - peptide/nickel transport system ATP-binding protein, at 200,909 to 203,143
_04094
Position (kb) 200
201 Strain fitness (log2 ratio) -2
-1
0
1
2 at 199.140 kb on - strand, within H281DRAFT_04092 at 199.140 kb on - strand, within H281DRAFT_04092 at 199.246 kb on - strand, within H281DRAFT_04092 at 199.285 kb on + strand, within H281DRAFT_04092 at 199.285 kb on + strand, within H281DRAFT_04092 at 199.334 kb on - strand, within H281DRAFT_04092 at 199.340 kb on - strand, within H281DRAFT_04092 at 199.675 kb on + strand, within H281DRAFT_04092 at 199.675 kb on + strand, within H281DRAFT_04092 at 199.675 kb on + strand, within H281DRAFT_04092 at 199.678 kb on - strand, within H281DRAFT_04092 at 199.903 kb on + strand, within H281DRAFT_04092 at 199.903 kb on + strand, within H281DRAFT_04092 at 199.969 kb on + strand at 200.208 kb on + strand, within H281DRAFT_04093 at 200.374 kb on + strand, within H281DRAFT_04093 at 200.374 kb on + strand, within H281DRAFT_04093 at 200.374 kb on + strand, within H281DRAFT_04093 at 200.512 kb on + strand, within H281DRAFT_04093 at 201.002 kb on + strand at 201.003 kb on - strand at 201.003 kb on - strand at 201.153 kb on + strand, within H281DRAFT_04094 at 201.153 kb on + strand, within H281DRAFT_04094 at 201.410 kb on + strand, within H281DRAFT_04094 at 201.590 kb on - strand, within H281DRAFT_04094 at 201.824 kb on + strand, within H281DRAFT_04094 at 201.825 kb on - strand, within H281DRAFT_04094
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 199,140 - H281DRAFT_04092 0.10 -1.8 199,140 - H281DRAFT_04092 0.10 +0.8 199,246 - H281DRAFT_04092 0.21 +0.0 199,285 + H281DRAFT_04092 0.24 -0.0 199,285 + H281DRAFT_04092 0.24 -0.2 199,334 - H281DRAFT_04092 0.29 -1.1 199,340 - H281DRAFT_04092 0.30 +1.3 199,675 + H281DRAFT_04092 0.63 +0.1 199,675 + H281DRAFT_04092 0.63 -0.1 199,675 + H281DRAFT_04092 0.63 +0.1 199,678 - H281DRAFT_04092 0.63 -0.2 199,903 + H281DRAFT_04092 0.86 -2.7 199,903 + H281DRAFT_04092 0.86 +0.6 199,969 + +0.7 200,208 + H281DRAFT_04093 0.19 +0.1 200,374 + H281DRAFT_04093 0.38 -0.5 200,374 + H281DRAFT_04093 0.38 +0.0 200,374 + H281DRAFT_04093 0.38 +0.1 200,512 + H281DRAFT_04093 0.54 -1.3 201,002 + -0.9 201,003 - +0.4 201,003 - +0.3 201,153 + H281DRAFT_04094 0.11 +1.3 201,153 + H281DRAFT_04094 0.11 +0.1 201,410 + H281DRAFT_04094 0.22 +1.9 201,590 - H281DRAFT_04094 0.30 -0.6 201,824 + H281DRAFT_04094 0.41 +0.2 201,825 - H281DRAFT_04094 0.41 +1.6
Or see this region's nucleotide sequence