Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04091

Experiment: NoPhageControl

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04090 and H281DRAFT_04091 are separated by 364 nucleotidesH281DRAFT_04091 and H281DRAFT_04092 are separated by 41 nucleotides H281DRAFT_04090: H281DRAFT_04090 - high-affinity nickel-transport protein, at 195,931 to 196,959 _04090 H281DRAFT_04091: H281DRAFT_04091 - peptide/nickel transport system substrate-binding protein, at 197,324 to 198,997 _04091 H281DRAFT_04092: H281DRAFT_04092 - peptide/nickel transport system permease protein, at 199,039 to 200,046 _04092 Position (kb) 197 198 199Strain fitness (log2 ratio) -2 -1 0 1at 196.497 kb on + strand, within H281DRAFT_04090at 196.497 kb on + strand, within H281DRAFT_04090at 196.497 kb on + strand, within H281DRAFT_04090at 196.498 kb on - strand, within H281DRAFT_04090at 196.498 kb on - strand, within H281DRAFT_04090at 196.498 kb on - strand, within H281DRAFT_04090at 196.600 kb on + strand, within H281DRAFT_04090at 196.684 kb on + strand, within H281DRAFT_04090at 196.720 kb on + strand, within H281DRAFT_04090at 196.720 kb on + strand, within H281DRAFT_04090at 196.723 kb on + strandat 196.738 kb on - strand, within H281DRAFT_04090at 196.738 kb on - strand, within H281DRAFT_04090at 196.766 kb on + strand, within H281DRAFT_04090at 196.779 kb on - strand, within H281DRAFT_04090at 196.779 kb on - strand, within H281DRAFT_04090at 197.009 kb on - strandat 197.190 kb on - strandat 197.204 kb on + strandat 197.207 kb on + strandat 197.945 kb on + strand, within H281DRAFT_04091at 197.945 kb on + strand, within H281DRAFT_04091at 197.963 kb on + strand, within H281DRAFT_04091at 197.990 kb on + strand, within H281DRAFT_04091at 198.090 kb on - strand, within H281DRAFT_04091at 198.134 kb on + strand, within H281DRAFT_04091at 198.134 kb on + strand, within H281DRAFT_04091at 198.135 kb on - strand, within H281DRAFT_04091at 198.240 kb on - strand, within H281DRAFT_04091at 198.696 kb on - strand, within H281DRAFT_04091at 198.785 kb on + strand, within H281DRAFT_04091at 198.968 kb on + strandat 198.969 kb on - strandat 199.140 kb on - strand, within H281DRAFT_04092at 199.140 kb on - strand, within H281DRAFT_04092at 199.246 kb on - strand, within H281DRAFT_04092at 199.285 kb on + strand, within H281DRAFT_04092at 199.285 kb on + strand, within H281DRAFT_04092at 199.334 kb on - strand, within H281DRAFT_04092at 199.340 kb on - strand, within H281DRAFT_04092at 199.675 kb on + strand, within H281DRAFT_04092at 199.675 kb on + strand, within H281DRAFT_04092at 199.675 kb on + strand, within H281DRAFT_04092at 199.678 kb on - strand, within H281DRAFT_04092at 199.903 kb on + strand, within H281DRAFT_04092at 199.903 kb on + strand, within H281DRAFT_04092at 199.969 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
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196,497 + H281DRAFT_04090 0.55 +0.4
196,497 + H281DRAFT_04090 0.55 -0.4
196,497 + H281DRAFT_04090 0.55 -0.4
196,498 - H281DRAFT_04090 0.55 -0.1
196,498 - H281DRAFT_04090 0.55 +0.4
196,498 - H281DRAFT_04090 0.55 -0.0
196,600 + H281DRAFT_04090 0.65 -0.0
196,684 + H281DRAFT_04090 0.73 -0.8
196,720 + H281DRAFT_04090 0.77 -0.5
196,720 + H281DRAFT_04090 0.77 +0.2
196,723 + +0.9
196,738 - H281DRAFT_04090 0.78 +0.5
196,738 - H281DRAFT_04090 0.78 +0.4
196,766 + H281DRAFT_04090 0.81 -2.1
196,779 - H281DRAFT_04090 0.82 +0.1
196,779 - H281DRAFT_04090 0.82 -0.1
197,009 - -1.8
197,190 - +0.7
197,204 + +1.3
197,207 + -0.0
197,945 + H281DRAFT_04091 0.37 +0.0
197,945 + H281DRAFT_04091 0.37 +0.1
197,963 + H281DRAFT_04091 0.38 +1.5
197,990 + H281DRAFT_04091 0.40 +0.5
198,090 - H281DRAFT_04091 0.46 +0.2
198,134 + H281DRAFT_04091 0.48 +0.6
198,134 + H281DRAFT_04091 0.48 +0.3
198,135 - H281DRAFT_04091 0.48 -1.4
198,240 - H281DRAFT_04091 0.55 +0.8
198,696 - H281DRAFT_04091 0.82 -1.1
198,785 + H281DRAFT_04091 0.87 -0.1
198,968 + +0.1
198,969 - -0.1
199,140 - H281DRAFT_04092 0.10 -1.8
199,140 - H281DRAFT_04092 0.10 +0.8
199,246 - H281DRAFT_04092 0.21 +0.0
199,285 + H281DRAFT_04092 0.24 -0.0
199,285 + H281DRAFT_04092 0.24 -0.2
199,334 - H281DRAFT_04092 0.29 -1.1
199,340 - H281DRAFT_04092 0.30 +1.3
199,675 + H281DRAFT_04092 0.63 +0.1
199,675 + H281DRAFT_04092 0.63 -0.1
199,675 + H281DRAFT_04092 0.63 +0.1
199,678 - H281DRAFT_04092 0.63 -0.2
199,903 + H281DRAFT_04092 0.86 -2.7
199,903 + H281DRAFT_04092 0.86 +0.6
199,969 + +0.7

Or see this region's nucleotide sequence