Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03300 and H281DRAFT_03301 are separated by 249 nucleotides H281DRAFT_03301 and H281DRAFT_03302 are separated by 57 nucleotides H281DRAFT_03302 and H281DRAFT_03303 are separated by 148 nucleotides
H281DRAFT_03300: H281DRAFT_03300 - cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein, at 360,516 to 361,964
_03300
H281DRAFT_03301: H281DRAFT_03301 - oxidoreductase alpha (molybdopterin) subunit, at 362,214 to 364,520
_03301
H281DRAFT_03302: H281DRAFT_03302 - Hemerythrin HHE cation binding domain-containing protein, at 364,578 to 365,165
_03302
H281DRAFT_03303: H281DRAFT_03303 - NAD+ synthase (glutamine-hydrolysing), at 365,314 to 367,362
_03303
Position (kb) 362
363
364
365 Strain fitness (log2 ratio) -1
0
1
2 at 361.862 kb on - strand at 361.862 kb on - strand at 362.043 kb on - strand at 362.360 kb on + strand at 362.436 kb on - strand at 362.697 kb on + strand, within H281DRAFT_03301 at 362.698 kb on - strand, within H281DRAFT_03301 at 362.724 kb on + strand, within H281DRAFT_03301 at 363.199 kb on - strand, within H281DRAFT_03301 at 363.226 kb on + strand, within H281DRAFT_03301 at 363.546 kb on - strand, within H281DRAFT_03301 at 363.981 kb on + strand, within H281DRAFT_03301 at 364.673 kb on + strand, within H281DRAFT_03302 at 364.674 kb on - strand, within H281DRAFT_03302 at 364.682 kb on + strand, within H281DRAFT_03302 at 365.106 kb on - strand, within H281DRAFT_03302 at 365.513 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 361,862 - -1.0 361,862 - -0.1 362,043 - +2.4 362,360 + +0.0 362,436 - -0.4 362,697 + H281DRAFT_03301 0.21 -1.0 362,698 - H281DRAFT_03301 0.21 -0.6 362,724 + H281DRAFT_03301 0.22 +0.7 363,199 - H281DRAFT_03301 0.43 +0.8 363,226 + H281DRAFT_03301 0.44 -0.1 363,546 - H281DRAFT_03301 0.58 +0.4 363,981 + H281DRAFT_03301 0.77 +2.0 364,673 + H281DRAFT_03302 0.16 +0.9 364,674 - H281DRAFT_03302 0.16 -0.5 364,682 + H281DRAFT_03302 0.18 +0.3 365,106 - H281DRAFT_03302 0.90 -1.6 365,513 + -0.3
Or see this region's nucleotide sequence