Experiment: NoPhageControl
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01675 and H281DRAFT_01676 are separated by 64 nucleotides H281DRAFT_01676 and H281DRAFT_01677 are separated by 102 nucleotides H281DRAFT_01677 and H281DRAFT_01678 are separated by 18 nucleotides
H281DRAFT_01675: H281DRAFT_01675 - PAS/PAC sensor hybrid histidine kinase (EC 2.7.13.3), at 557,697 to 560,219
_01675
H281DRAFT_01676: H281DRAFT_01676 - transcriptional regulator, LysR family, at 560,284 to 561,189
_01676
H281DRAFT_01677: H281DRAFT_01677 - 3-dehydroquinate dehydratase, at 561,292 to 561,729
_01677
H281DRAFT_01678: H281DRAFT_01678 - Predicted dehydrogenase, at 561,748 to 562,800
_01678
Position (kb) 560
561
562 Strain fitness (log2 ratio) -1
0
1 at 559.565 kb on + strand, within H281DRAFT_01675 at 559.769 kb on - strand, within H281DRAFT_01675 at 559.938 kb on + strand, within H281DRAFT_01675 at 560.352 kb on - strand at 560.352 kb on - strand at 560.386 kb on - strand, within H281DRAFT_01676 at 560.539 kb on + strand, within H281DRAFT_01676 at 560.539 kb on + strand, within H281DRAFT_01676 at 560.540 kb on - strand, within H281DRAFT_01676 at 560.540 kb on - strand, within H281DRAFT_01676 at 560.618 kb on + strand, within H281DRAFT_01676 at 560.619 kb on - strand, within H281DRAFT_01676 at 560.690 kb on + strand, within H281DRAFT_01676 at 560.691 kb on - strand, within H281DRAFT_01676 at 560.705 kb on + strand, within H281DRAFT_01676 at 560.706 kb on - strand, within H281DRAFT_01676 at 560.728 kb on + strand, within H281DRAFT_01676 at 560.730 kb on + strand, within H281DRAFT_01676 at 560.731 kb on - strand, within H281DRAFT_01676 at 560.731 kb on - strand, within H281DRAFT_01676 at 561.022 kb on - strand, within H281DRAFT_01676 at 561.172 kb on + strand at 561.234 kb on - strand at 561.239 kb on + strand at 561.290 kb on + strand at 561.426 kb on + strand, within H281DRAFT_01677 at 561.483 kb on + strand, within H281DRAFT_01677 at 561.484 kb on - strand, within H281DRAFT_01677 at 561.484 kb on - strand, within H281DRAFT_01677 at 561.486 kb on - strand, within H281DRAFT_01677 at 561.529 kb on - strand, within H281DRAFT_01677 at 561.974 kb on + strand, within H281DRAFT_01678 at 562.031 kb on + strand, within H281DRAFT_01678 at 562.049 kb on + strand, within H281DRAFT_01678 at 562.049 kb on + strand, within H281DRAFT_01678
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl remove 559,565 + H281DRAFT_01675 0.74 -1.1 559,769 - H281DRAFT_01675 0.82 -0.8 559,938 + H281DRAFT_01675 0.89 -1.2 560,352 - +0.0 560,352 - +0.5 560,386 - H281DRAFT_01676 0.11 -0.9 560,539 + H281DRAFT_01676 0.28 -0.6 560,539 + H281DRAFT_01676 0.28 +0.4 560,540 - H281DRAFT_01676 0.28 +0.1 560,540 - H281DRAFT_01676 0.28 -0.3 560,618 + H281DRAFT_01676 0.37 +0.1 560,619 - H281DRAFT_01676 0.37 -0.2 560,690 + H281DRAFT_01676 0.45 +0.3 560,691 - H281DRAFT_01676 0.45 -0.1 560,705 + H281DRAFT_01676 0.46 +0.7 560,706 - H281DRAFT_01676 0.47 +1.7 560,728 + H281DRAFT_01676 0.49 +1.6 560,730 + H281DRAFT_01676 0.49 +0.1 560,731 - H281DRAFT_01676 0.49 +0.5 560,731 - H281DRAFT_01676 0.49 +0.4 561,022 - H281DRAFT_01676 0.81 +0.8 561,172 + +0.2 561,234 - +1.0 561,239 + -0.4 561,290 + +0.6 561,426 + H281DRAFT_01677 0.31 -1.5 561,483 + H281DRAFT_01677 0.44 +0.0 561,484 - H281DRAFT_01677 0.44 +0.4 561,484 - H281DRAFT_01677 0.44 -0.0 561,486 - H281DRAFT_01677 0.44 -0.1 561,529 - H281DRAFT_01677 0.54 -0.2 561,974 + H281DRAFT_01678 0.21 -0.3 562,031 + H281DRAFT_01678 0.27 -0.5 562,049 + H281DRAFT_01678 0.29 -1.1 562,049 + H281DRAFT_01678 0.29 +1.3
Or see this region's nucleotide sequence