Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00915

Experiment: NoPhageControl

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_00914 and H281DRAFT_00915 are separated by 245 nucleotidesH281DRAFT_00915 and H281DRAFT_00916 are separated by 183 nucleotides H281DRAFT_00914: H281DRAFT_00914 - Uncharacterized conserved protein YdiU, UPF0061 family, at 1,015,146 to 1,016,702 _00914 H281DRAFT_00915: H281DRAFT_00915 - fatty-acyl-CoA synthase, at 1,016,948 to 1,018,633 _00915 H281DRAFT_00916: H281DRAFT_00916 - short chain enoyl-CoA hydratase /3-hydroxyacyl-CoA dehydrogenase, at 1,018,817 to 1,020,901 _00916 Position (kb) 1016 1017 1018 1019Strain fitness (log2 ratio) -2 -1 0 1at 1016.313 kb on + strand, within H281DRAFT_00914at 1016.313 kb on + strand, within H281DRAFT_00914at 1016.314 kb on - strand, within H281DRAFT_00914at 1016.314 kb on - strand, within H281DRAFT_00914at 1016.417 kb on - strand, within H281DRAFT_00914at 1016.429 kb on - strand, within H281DRAFT_00914at 1016.462 kb on + strand, within H281DRAFT_00914at 1016.462 kb on + strand, within H281DRAFT_00914at 1016.462 kb on + strand, within H281DRAFT_00914at 1016.463 kb on - strand, within H281DRAFT_00914at 1016.639 kb on + strandat 1016.639 kb on + strandat 1016.718 kb on - strandat 1016.718 kb on - strandat 1016.728 kb on - strandat 1016.732 kb on + strandat 1016.732 kb on + strandat 1016.733 kb on - strandat 1016.733 kb on - strandat 1016.733 kb on - strandat 1016.802 kb on + strandat 1016.803 kb on - strandat 1016.803 kb on - strandat 1016.803 kb on - strandat 1016.803 kb on - strandat 1017.078 kb on - strandat 1017.083 kb on + strandat 1017.083 kb on + strandat 1017.084 kb on - strandat 1017.084 kb on - strandat 1017.200 kb on + strand, within H281DRAFT_00915at 1017.201 kb on - strand, within H281DRAFT_00915at 1017.201 kb on - strand, within H281DRAFT_00915at 1017.272 kb on + strand, within H281DRAFT_00915at 1017.273 kb on - strand, within H281DRAFT_00915at 1017.273 kb on - strand, within H281DRAFT_00915at 1017.273 kb on - strand, within H281DRAFT_00915at 1017.299 kb on + strand, within H281DRAFT_00915at 1017.300 kb on - strand, within H281DRAFT_00915at 1017.300 kb on - strand, within H281DRAFT_00915at 1017.300 kb on - strand, within H281DRAFT_00915at 1017.429 kb on - strand, within H281DRAFT_00915at 1017.498 kb on - strand, within H281DRAFT_00915at 1017.498 kb on - strand, within H281DRAFT_00915at 1017.508 kb on + strand, within H281DRAFT_00915at 1017.508 kb on + strand, within H281DRAFT_00915at 1017.508 kb on + strand, within H281DRAFT_00915at 1017.509 kb on - strand, within H281DRAFT_00915at 1017.546 kb on - strand, within H281DRAFT_00915at 1017.640 kb on + strand, within H281DRAFT_00915at 1017.767 kb on + strand, within H281DRAFT_00915at 1017.767 kb on + strand, within H281DRAFT_00915at 1017.810 kb on - strand, within H281DRAFT_00915at 1017.810 kb on - strand, within H281DRAFT_00915at 1017.908 kb on + strand, within H281DRAFT_00915at 1017.915 kb on + strand, within H281DRAFT_00915at 1017.915 kb on + strand, within H281DRAFT_00915at 1018.046 kb on + strand, within H281DRAFT_00915at 1018.058 kb on - strand, within H281DRAFT_00915at 1018.121 kb on + strand, within H281DRAFT_00915at 1018.121 kb on + strand, within H281DRAFT_00915at 1018.122 kb on - strand, within H281DRAFT_00915at 1018.214 kb on - strand, within H281DRAFT_00915at 1018.442 kb on + strand, within H281DRAFT_00915at 1018.829 kb on + strandat 1019.139 kb on + strand, within H281DRAFT_00916at 1019.471 kb on - strand, within H281DRAFT_00916at 1019.471 kb on - strand, within H281DRAFT_00916

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NoPhageControl
remove
1,016,313 + H281DRAFT_00914 0.75 +0.2
1,016,313 + H281DRAFT_00914 0.75 -0.5
1,016,314 - H281DRAFT_00914 0.75 -1.5
1,016,314 - H281DRAFT_00914 0.75 -0.5
1,016,417 - H281DRAFT_00914 0.82 +1.1
1,016,429 - H281DRAFT_00914 0.82 +0.7
1,016,462 + H281DRAFT_00914 0.85 +0.6
1,016,462 + H281DRAFT_00914 0.85 +1.1
1,016,462 + H281DRAFT_00914 0.85 +0.8
1,016,463 - H281DRAFT_00914 0.85 +1.3
1,016,639 + +0.4
1,016,639 + +0.4
1,016,718 - +0.6
1,016,718 - -0.2
1,016,728 - -0.1
1,016,732 + -0.2
1,016,732 + +0.6
1,016,733 - -1.0
1,016,733 - +0.9
1,016,733 - +0.0
1,016,802 + -1.0
1,016,803 - -0.3
1,016,803 - +0.6
1,016,803 - +0.2
1,016,803 - +0.4
1,017,078 - -0.5
1,017,083 + -0.3
1,017,083 + +0.1
1,017,084 - +0.9
1,017,084 - +0.8
1,017,200 + H281DRAFT_00915 0.15 -0.4
1,017,201 - H281DRAFT_00915 0.15 +0.3
1,017,201 - H281DRAFT_00915 0.15 -0.2
1,017,272 + H281DRAFT_00915 0.19 -0.1
1,017,273 - H281DRAFT_00915 0.19 -0.1
1,017,273 - H281DRAFT_00915 0.19 -0.3
1,017,273 - H281DRAFT_00915 0.19 +1.1
1,017,299 + H281DRAFT_00915 0.21 -0.3
1,017,300 - H281DRAFT_00915 0.21 +0.1
1,017,300 - H281DRAFT_00915 0.21 +1.6
1,017,300 - H281DRAFT_00915 0.21 +0.4
1,017,429 - H281DRAFT_00915 0.29 +0.6
1,017,498 - H281DRAFT_00915 0.33 +0.1
1,017,498 - H281DRAFT_00915 0.33 +0.4
1,017,508 + H281DRAFT_00915 0.33 +0.4
1,017,508 + H281DRAFT_00915 0.33 +0.4
1,017,508 + H281DRAFT_00915 0.33 -0.2
1,017,509 - H281DRAFT_00915 0.33 -0.6
1,017,546 - H281DRAFT_00915 0.35 +0.8
1,017,640 + H281DRAFT_00915 0.41 +1.6
1,017,767 + H281DRAFT_00915 0.49 +0.1
1,017,767 + H281DRAFT_00915 0.49 -0.5
1,017,810 - H281DRAFT_00915 0.51 +0.2
1,017,810 - H281DRAFT_00915 0.51 -2.2
1,017,908 + H281DRAFT_00915 0.57 -0.1
1,017,915 + H281DRAFT_00915 0.57 +0.1
1,017,915 + H281DRAFT_00915 0.57 -0.3
1,018,046 + H281DRAFT_00915 0.65 -0.4
1,018,058 - H281DRAFT_00915 0.66 +0.1
1,018,121 + H281DRAFT_00915 0.70 -1.4
1,018,121 + H281DRAFT_00915 0.70 -0.8
1,018,122 - H281DRAFT_00915 0.70 +0.4
1,018,214 - H281DRAFT_00915 0.75 +0.1
1,018,442 + H281DRAFT_00915 0.89 -1.1
1,018,829 + -0.3
1,019,139 + H281DRAFT_00916 0.15 -0.1
1,019,471 - H281DRAFT_00916 0.31 +0.7
1,019,471 - H281DRAFT_00916 0.31 -0.1

Or see this region's nucleotide sequence