Experiment: LB in EcoFAB_10mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24030 and BWI76_RS24035 are separated by 8 nucleotides BWI76_RS24035 and BWI76_RS24040 are separated by 118 nucleotides BWI76_RS24040 and BWI76_RS24045 are separated by 15 nucleotides BWI76_RS24045 and BWI76_RS24050 are separated by 62 nucleotides
BWI76_RS24030: BWI76_RS24030 - arginine decarboxylase, at 5,015,360 to 5,017,336
_RS24030
BWI76_RS24035: BWI76_RS24035 - hypothetical protein, at 5,017,345 to 5,017,491
_RS24035
BWI76_RS24040: BWI76_RS24040 - hypothetical protein, at 5,017,610 to 5,017,855
_RS24040
BWI76_RS24045: BWI76_RS24045 - hypothetical protein, at 5,017,871 to 5,018,116
_RS24045
BWI76_RS24050: BWI76_RS24050 - methionine adenosyltransferase, at 5,018,179 to 5,019,333
_RS24050
Position (kb)
5017
5018 Strain fitness (log2 ratio)
-2
-1
0
1 at 5016.881 kb on - strand, within BWI76_RS24030 at 5016.923 kb on - strand, within BWI76_RS24030 at 5016.949 kb on + strand, within BWI76_RS24030 at 5017.062 kb on + strand, within BWI76_RS24030 at 5017.096 kb on - strand, within BWI76_RS24030 at 5017.314 kb on + strand at 5017.322 kb on - strand at 5017.408 kb on + strand, within BWI76_RS24035 at 5017.408 kb on + strand, within BWI76_RS24035 at 5017.416 kb on - strand, within BWI76_RS24035 at 5017.433 kb on + strand, within BWI76_RS24035 at 5017.446 kb on - strand, within BWI76_RS24035 at 5017.497 kb on - strand at 5017.503 kb on + strand at 5017.503 kb on + strand at 5017.511 kb on - strand at 5017.511 kb on - strand at 5017.511 kb on - strand at 5017.511 kb on - strand at 5017.563 kb on - strand at 5017.592 kb on + strand at 5017.602 kb on - strand at 5017.620 kb on - strand at 5017.620 kb on - strand at 5017.629 kb on + strand at 5017.651 kb on - strand, within BWI76_RS24040 at 5017.724 kb on + strand, within BWI76_RS24040 at 5017.756 kb on + strand, within BWI76_RS24040 at 5017.829 kb on - strand, within BWI76_RS24040 at 5017.868 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB in EcoFAB_10mL remove 5,016,881 - BWI76_RS24030 0.77 -1.4 5,016,923 - BWI76_RS24030 0.79 +0.6 5,016,949 + BWI76_RS24030 0.80 -0.1 5,017,062 + BWI76_RS24030 0.86 -1.4 5,017,096 - BWI76_RS24030 0.88 -0.3 5,017,314 + -0.8 5,017,322 - +0.8 5,017,408 + BWI76_RS24035 0.43 -0.1 5,017,408 + BWI76_RS24035 0.43 +0.1 5,017,416 - BWI76_RS24035 0.48 -1.8 5,017,433 + BWI76_RS24035 0.60 +0.2 5,017,446 - BWI76_RS24035 0.69 +0.6 5,017,497 - -0.8 5,017,503 + +1.0 5,017,503 + +0.3 5,017,511 - +0.0 5,017,511 - -0.2 5,017,511 - -1.6 5,017,511 - +0.2 5,017,563 - +0.6 5,017,592 + +0.3 5,017,602 - +0.2 5,017,620 - -0.5 5,017,620 - -0.5 5,017,629 + -0.1 5,017,651 - BWI76_RS24040 0.17 +0.8 5,017,724 + BWI76_RS24040 0.46 +0.9 5,017,756 + BWI76_RS24040 0.59 +0.3 5,017,829 - BWI76_RS24040 0.89 +1.6 5,017,868 + +0.2
Or see this region's nucleotide sequence