Experiment: LB in EcoFAB_10mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23770 and BWI76_RS23775 are separated by 215 nucleotides BWI76_RS23775 and BWI76_RS23780 are separated by 12 nucleotides BWI76_RS23780 and BWI76_RS23785 are separated by 14 nucleotides
BWI76_RS23770: BWI76_RS23770 - LysR family transcriptional regulator, at 4,962,015 to 4,962,911
_RS23770
BWI76_RS23775: BWI76_RS23775 - 3,4-dihydroxybenzoate decarboxylase, at 4,963,127 to 4,964,620
_RS23775
BWI76_RS23780: BWI76_RS23780 - aromatic acid decarboxylase, at 4,964,633 to 4,965,211
_RS23780
BWI76_RS23785: BWI76_RS23785 - hypothetical protein, at 4,965,226 to 4,965,942
_RS23785
Position (kb)
4963
4964
4965 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 4962.153 kb on + strand, within BWI76_RS23770 at 4962.157 kb on - strand, within BWI76_RS23770 at 4962.171 kb on - strand, within BWI76_RS23770 at 4962.188 kb on - strand, within BWI76_RS23770 at 4962.202 kb on + strand, within BWI76_RS23770 at 4962.227 kb on - strand, within BWI76_RS23770 at 4962.229 kb on + strand, within BWI76_RS23770 at 4962.230 kb on + strand, within BWI76_RS23770 at 4962.232 kb on - strand, within BWI76_RS23770 at 4962.237 kb on - strand, within BWI76_RS23770 at 4962.237 kb on - strand, within BWI76_RS23770 at 4962.277 kb on - strand, within BWI76_RS23770 at 4962.277 kb on - strand, within BWI76_RS23770 at 4962.305 kb on - strand, within BWI76_RS23770 at 4962.344 kb on - strand, within BWI76_RS23770 at 4962.377 kb on - strand, within BWI76_RS23770 at 4962.381 kb on - strand, within BWI76_RS23770 at 4962.412 kb on + strand, within BWI76_RS23770 at 4962.422 kb on + strand, within BWI76_RS23770 at 4962.422 kb on + strand, within BWI76_RS23770 at 4962.429 kb on - strand, within BWI76_RS23770 at 4962.429 kb on - strand, within BWI76_RS23770 at 4962.431 kb on + strand, within BWI76_RS23770 at 4962.431 kb on + strand, within BWI76_RS23770 at 4962.431 kb on + strand, within BWI76_RS23770 at 4962.431 kb on + strand, within BWI76_RS23770 at 4962.431 kb on + strand, within BWI76_RS23770 at 4962.439 kb on - strand, within BWI76_RS23770 at 4962.439 kb on - strand, within BWI76_RS23770 at 4962.439 kb on - strand, within BWI76_RS23770 at 4962.439 kb on - strand, within BWI76_RS23770 at 4962.439 kb on - strand, within BWI76_RS23770 at 4962.439 kb on - strand, within BWI76_RS23770 at 4962.439 kb on - strand, within BWI76_RS23770 at 4962.439 kb on - strand, within BWI76_RS23770 at 4962.439 kb on - strand, within BWI76_RS23770 at 4962.439 kb on - strand, within BWI76_RS23770 at 4962.439 kb on - strand, within BWI76_RS23770 at 4962.439 kb on - strand, within BWI76_RS23770 at 4962.454 kb on + strand, within BWI76_RS23770 at 4962.454 kb on + strand, within BWI76_RS23770 at 4962.454 kb on - strand, within BWI76_RS23770 at 4962.455 kb on - strand, within BWI76_RS23770 at 4962.463 kb on + strand, within BWI76_RS23770 at 4962.463 kb on + strand, within BWI76_RS23770 at 4962.465 kb on - strand, within BWI76_RS23770 at 4962.471 kb on - strand, within BWI76_RS23770 at 4962.476 kb on + strand, within BWI76_RS23770 at 4962.476 kb on + strand, within BWI76_RS23770 at 4962.476 kb on + strand, within BWI76_RS23770 at 4962.476 kb on + strand, within BWI76_RS23770 at 4962.476 kb on + strand, within BWI76_RS23770 at 4962.476 kb on + strand, within BWI76_RS23770 at 4962.477 kb on + strand, within BWI76_RS23770 at 4962.477 kb on + strand, within BWI76_RS23770 at 4962.478 kb on + strand, within BWI76_RS23770 at 4962.484 kb on - strand, within BWI76_RS23770 at 4962.484 kb on - strand, within BWI76_RS23770 at 4962.484 kb on - strand, within BWI76_RS23770 at 4962.484 kb on - strand, within BWI76_RS23770 at 4962.485 kb on - strand, within BWI76_RS23770 at 4962.498 kb on + strand, within BWI76_RS23770 at 4962.506 kb on - strand, within BWI76_RS23770 at 4962.513 kb on + strand, within BWI76_RS23770 at 4962.513 kb on - strand, within BWI76_RS23770 at 4962.532 kb on - strand, within BWI76_RS23770 at 4962.532 kb on - strand, within BWI76_RS23770 at 4962.570 kb on - strand at 4962.571 kb on + strand, within BWI76_RS23770 at 4962.585 kb on + strand, within BWI76_RS23770 at 4962.585 kb on - strand, within BWI76_RS23770 at 4962.625 kb on - strand, within BWI76_RS23770 at 4962.625 kb on - strand, within BWI76_RS23770 at 4962.626 kb on - strand, within BWI76_RS23770 at 4962.638 kb on - strand, within BWI76_RS23770 at 4962.640 kb on + strand, within BWI76_RS23770 at 4962.677 kb on + strand, within BWI76_RS23770 at 4962.683 kb on + strand, within BWI76_RS23770 at 4962.683 kb on + strand, within BWI76_RS23770 at 4962.692 kb on + strand, within BWI76_RS23770 at 4962.701 kb on - strand, within BWI76_RS23770 at 4962.718 kb on - strand, within BWI76_RS23770 at 4962.743 kb on + strand, within BWI76_RS23770 at 4962.751 kb on - strand, within BWI76_RS23770 at 4962.751 kb on - strand, within BWI76_RS23770 at 4962.788 kb on + strand, within BWI76_RS23770 at 4962.788 kb on + strand, within BWI76_RS23770 at 4962.822 kb on + strand at 4962.834 kb on + strand at 4962.834 kb on + strand at 4962.834 kb on + strand at 4962.834 kb on + strand at 4962.834 kb on + strand at 4962.834 kb on + strand at 4962.836 kb on + strand at 4962.842 kb on - strand at 4962.842 kb on - strand at 4962.842 kb on - strand at 4962.842 kb on - strand at 4962.858 kb on + strand at 4962.859 kb on + strand at 4962.862 kb on - strand at 4962.867 kb on + strand at 4962.868 kb on + strand at 4962.908 kb on - strand at 4962.926 kb on + strand at 4962.926 kb on + strand at 4962.942 kb on + strand at 4962.948 kb on + strand at 4962.948 kb on + strand at 4962.950 kb on - strand at 4962.950 kb on - strand at 4963.045 kb on - strand at 4963.058 kb on - strand at 4963.084 kb on + strand at 4963.096 kb on + strand at 4963.104 kb on - strand at 4963.117 kb on + strand at 4963.118 kb on + strand at 4963.118 kb on + strand at 4963.126 kb on - strand at 4963.126 kb on - strand at 4963.129 kb on + strand at 4963.129 kb on - strand at 4963.137 kb on - strand at 4963.166 kb on + strand at 4963.168 kb on - strand at 4963.174 kb on - strand at 4963.174 kb on - strand at 4963.174 kb on - strand at 4963.189 kb on + strand at 4963.189 kb on + strand at 4963.197 kb on - strand at 4963.197 kb on - strand at 4963.204 kb on - strand at 4963.388 kb on - strand, within BWI76_RS23775 at 4963.446 kb on + strand, within BWI76_RS23775 at 4963.480 kb on - strand at 4963.540 kb on + strand, within BWI76_RS23775 at 4963.606 kb on + strand, within BWI76_RS23775 at 4963.614 kb on - strand, within BWI76_RS23775 at 4963.877 kb on + strand, within BWI76_RS23775 at 4963.881 kb on + strand, within BWI76_RS23775 at 4963.891 kb on + strand, within BWI76_RS23775 at 4963.899 kb on - strand, within BWI76_RS23775 at 4963.949 kb on + strand, within BWI76_RS23775 at 4963.984 kb on + strand, within BWI76_RS23775 at 4964.088 kb on - strand, within BWI76_RS23775 at 4964.103 kb on + strand, within BWI76_RS23775 at 4964.103 kb on + strand, within BWI76_RS23775 at 4964.164 kb on + strand, within BWI76_RS23775 at 4964.383 kb on + strand, within BWI76_RS23775 at 4964.383 kb on + strand, within BWI76_RS23775 at 4964.383 kb on + strand, within BWI76_RS23775 at 4964.391 kb on - strand, within BWI76_RS23775 at 4964.391 kb on - strand, within BWI76_RS23775 at 4964.391 kb on - strand, within BWI76_RS23775 at 4964.391 kb on - strand, within BWI76_RS23775 at 4964.449 kb on - strand, within BWI76_RS23775 at 4964.454 kb on + strand, within BWI76_RS23775 at 4964.472 kb on + strand at 4964.545 kb on - strand at 4964.583 kb on + strand at 4964.637 kb on - strand at 4964.637 kb on - strand at 4964.657 kb on - strand at 4964.685 kb on + strand at 4964.843 kb on + strand, within BWI76_RS23780 at 4964.848 kb on + strand, within BWI76_RS23780 at 4964.982 kb on + strand, within BWI76_RS23780 at 4965.163 kb on + strand at 4965.178 kb on + strand at 4965.244 kb on - strand at 4965.335 kb on - strand, within BWI76_RS23785 at 4965.343 kb on - strand, within BWI76_RS23785 at 4965.358 kb on - strand, within BWI76_RS23785 at 4965.535 kb on - strand, within BWI76_RS23785
Per-strain Table
Position Strand Gene LocusTag Fraction LB in EcoFAB_10mL remove 4,962,153 + BWI76_RS23770 0.15 -1.1 4,962,157 - BWI76_RS23770 0.16 +0.3 4,962,171 - BWI76_RS23770 0.17 +0.2 4,962,188 - BWI76_RS23770 0.19 -1.2 4,962,202 + BWI76_RS23770 0.21 -0.6 4,962,227 - BWI76_RS23770 0.24 -1.5 4,962,229 + BWI76_RS23770 0.24 -1.2 4,962,230 + BWI76_RS23770 0.24 +0.1 4,962,232 - BWI76_RS23770 0.24 -0.3 4,962,237 - BWI76_RS23770 0.25 -0.6 4,962,237 - BWI76_RS23770 0.25 +0.1 4,962,277 - BWI76_RS23770 0.29 +0.6 4,962,277 - BWI76_RS23770 0.29 +1.3 4,962,305 - BWI76_RS23770 0.32 +0.8 4,962,344 - BWI76_RS23770 0.37 -0.7 4,962,377 - BWI76_RS23770 0.40 -0.5 4,962,381 - BWI76_RS23770 0.41 -0.6 4,962,412 + BWI76_RS23770 0.44 +0.6 4,962,422 + BWI76_RS23770 0.45 +0.3 4,962,422 + BWI76_RS23770 0.45 -0.2 4,962,429 - BWI76_RS23770 0.46 +0.7 4,962,429 - BWI76_RS23770 0.46 -0.2 4,962,431 + BWI76_RS23770 0.46 -0.3 4,962,431 + BWI76_RS23770 0.46 +0.1 4,962,431 + BWI76_RS23770 0.46 +1.0 4,962,431 + BWI76_RS23770 0.46 -0.3 4,962,431 + BWI76_RS23770 0.46 +0.4 4,962,439 - BWI76_RS23770 0.47 +4.3 4,962,439 - BWI76_RS23770 0.47 +0.8 4,962,439 - BWI76_RS23770 0.47 +0.4 4,962,439 - BWI76_RS23770 0.47 -1.2 4,962,439 - BWI76_RS23770 0.47 -0.4 4,962,439 - BWI76_RS23770 0.47 +0.6 4,962,439 - BWI76_RS23770 0.47 +0.5 4,962,439 - BWI76_RS23770 0.47 +0.2 4,962,439 - BWI76_RS23770 0.47 +2.1 4,962,439 - BWI76_RS23770 0.47 +0.4 4,962,439 - BWI76_RS23770 0.47 -0.3 4,962,439 - BWI76_RS23770 0.47 -1.1 4,962,454 + BWI76_RS23770 0.49 -0.7 4,962,454 + BWI76_RS23770 0.49 -0.1 4,962,454 - BWI76_RS23770 0.49 -1.2 4,962,455 - BWI76_RS23770 0.49 -1.1 4,962,463 + BWI76_RS23770 0.50 +0.5 4,962,463 + BWI76_RS23770 0.50 +1.8 4,962,465 - BWI76_RS23770 0.50 -1.0 4,962,471 - BWI76_RS23770 0.51 -0.4 4,962,476 + BWI76_RS23770 0.51 -0.4 4,962,476 + BWI76_RS23770 0.51 +0.3 4,962,476 + BWI76_RS23770 0.51 -1.1 4,962,476 + BWI76_RS23770 0.51 -0.5 4,962,476 + BWI76_RS23770 0.51 -0.5 4,962,476 + BWI76_RS23770 0.51 -0.2 4,962,477 + BWI76_RS23770 0.52 -0.6 4,962,477 + BWI76_RS23770 0.52 +0.4 4,962,478 + BWI76_RS23770 0.52 +0.4 4,962,484 - BWI76_RS23770 0.52 -0.6 4,962,484 - BWI76_RS23770 0.52 -0.8 4,962,484 - BWI76_RS23770 0.52 +0.5 4,962,484 - BWI76_RS23770 0.52 -0.7 4,962,485 - BWI76_RS23770 0.52 -0.0 4,962,498 + BWI76_RS23770 0.54 -0.1 4,962,506 - BWI76_RS23770 0.55 +0.8 4,962,513 + BWI76_RS23770 0.56 -0.6 4,962,513 - BWI76_RS23770 0.56 +0.4 4,962,532 - BWI76_RS23770 0.58 +0.2 4,962,532 - BWI76_RS23770 0.58 -0.6 4,962,570 - -0.6 4,962,571 + BWI76_RS23770 0.62 -1.4 4,962,585 + BWI76_RS23770 0.64 -2.3 4,962,585 - BWI76_RS23770 0.64 -0.7 4,962,625 - BWI76_RS23770 0.68 -0.4 4,962,625 - BWI76_RS23770 0.68 +1.0 4,962,626 - BWI76_RS23770 0.68 +0.6 4,962,638 - BWI76_RS23770 0.69 -0.1 4,962,640 + BWI76_RS23770 0.70 -0.7 4,962,677 + BWI76_RS23770 0.74 +0.2 4,962,683 + BWI76_RS23770 0.74 -1.2 4,962,683 + BWI76_RS23770 0.74 +0.7 4,962,692 + BWI76_RS23770 0.75 -0.0 4,962,701 - BWI76_RS23770 0.76 -0.4 4,962,718 - BWI76_RS23770 0.78 -0.8 4,962,743 + BWI76_RS23770 0.81 -1.8 4,962,751 - BWI76_RS23770 0.82 -1.7 4,962,751 - BWI76_RS23770 0.82 -0.6 4,962,788 + BWI76_RS23770 0.86 -0.2 4,962,788 + BWI76_RS23770 0.86 +0.2 4,962,822 + +0.4 4,962,834 + -1.6 4,962,834 + -1.3 4,962,834 + -0.1 4,962,834 + -0.0 4,962,834 + -0.1 4,962,834 + -0.8 4,962,836 + +3.1 4,962,842 - -0.2 4,962,842 - -1.2 4,962,842 - -0.1 4,962,842 - +0.4 4,962,858 + -0.4 4,962,859 + -0.7 4,962,862 - -0.0 4,962,867 + -0.0 4,962,868 + +4.7 4,962,908 - -0.6 4,962,926 + +0.1 4,962,926 + +0.1 4,962,942 + +1.4 4,962,948 + -1.2 4,962,948 + -0.7 4,962,950 - +0.0 4,962,950 - +0.1 4,963,045 - -0.2 4,963,058 - -2.2 4,963,084 + -0.1 4,963,096 + +0.3 4,963,104 - +0.8 4,963,117 + -0.3 4,963,118 + -0.3 4,963,118 + +1.3 4,963,126 - -0.3 4,963,126 - +0.4 4,963,129 + +0.2 4,963,129 - -0.1 4,963,137 - +0.2 4,963,166 + +0.3 4,963,168 - -0.3 4,963,174 - +1.8 4,963,174 - +0.5 4,963,174 - +0.3 4,963,189 + -0.6 4,963,189 + +1.0 4,963,197 - -2.5 4,963,197 - -0.1 4,963,204 - -0.5 4,963,388 - BWI76_RS23775 0.17 -0.3 4,963,446 + BWI76_RS23775 0.21 +0.6 4,963,480 - +1.7 4,963,540 + BWI76_RS23775 0.28 +0.1 4,963,606 + BWI76_RS23775 0.32 +1.3 4,963,614 - BWI76_RS23775 0.33 +0.1 4,963,877 + BWI76_RS23775 0.50 +0.7 4,963,881 + BWI76_RS23775 0.50 +0.0 4,963,891 + BWI76_RS23775 0.51 +0.2 4,963,899 - BWI76_RS23775 0.52 +0.0 4,963,949 + BWI76_RS23775 0.55 +4.7 4,963,984 + BWI76_RS23775 0.57 -0.6 4,964,088 - BWI76_RS23775 0.64 +0.4 4,964,103 + BWI76_RS23775 0.65 -0.3 4,964,103 + BWI76_RS23775 0.65 +0.1 4,964,164 + BWI76_RS23775 0.69 -0.2 4,964,383 + BWI76_RS23775 0.84 +0.8 4,964,383 + BWI76_RS23775 0.84 -0.0 4,964,383 + BWI76_RS23775 0.84 +0.6 4,964,391 - BWI76_RS23775 0.85 +0.1 4,964,391 - BWI76_RS23775 0.85 +1.3 4,964,391 - BWI76_RS23775 0.85 -1.2 4,964,391 - BWI76_RS23775 0.85 +0.6 4,964,449 - BWI76_RS23775 0.88 +1.1 4,964,454 + BWI76_RS23775 0.89 -0.5 4,964,472 + -0.1 4,964,545 - -0.1 4,964,583 + -0.4 4,964,637 - -0.2 4,964,637 - -0.6 4,964,657 - -0.4 4,964,685 + +1.3 4,964,843 + BWI76_RS23780 0.36 -0.5 4,964,848 + BWI76_RS23780 0.37 -0.2 4,964,982 + BWI76_RS23780 0.60 +0.5 4,965,163 + -0.4 4,965,178 + +0.3 4,965,244 - +0.2 4,965,335 - BWI76_RS23785 0.15 -0.4 4,965,343 - BWI76_RS23785 0.16 -0.7 4,965,358 - BWI76_RS23785 0.18 -1.0 4,965,535 - BWI76_RS23785 0.43 -0.7
Or see this region's nucleotide sequence