Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS09045

Experiment: LB in EcoFAB_10mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS09040 and BWI76_RS09045 are separated by 168 nucleotidesBWI76_RS09045 and BWI76_RS09050 are separated by 15 nucleotides BWI76_RS09040: BWI76_RS09040 - ABC-F family ATPase, at 1,904,369 to 1,905,961 _RS09040 BWI76_RS09045: BWI76_RS09045 - alpha-glucosidase, at 1,906,130 to 1,908,493 _RS09045 BWI76_RS09050: BWI76_RS09050 - MFS transporter, at 1,908,509 to 1,909,810 _RS09050 Position (kb) 1906 1907 1908 1909Strain fitness (log2 ratio) -2 -1 0 1 2at 1905.721 kb on + strand, within BWI76_RS09040at 1905.940 kb on - strandat 1905.943 kb on + strandat 1905.951 kb on - strandat 1906.042 kb on + strandat 1906.276 kb on - strandat 1906.302 kb on + strandat 1906.397 kb on + strand, within BWI76_RS09045at 1906.699 kb on + strand, within BWI76_RS09045at 1906.737 kb on + strand, within BWI76_RS09045at 1906.794 kb on - strand, within BWI76_RS09045at 1907.086 kb on - strand, within BWI76_RS09045at 1907.574 kb on + strand, within BWI76_RS09045at 1907.857 kb on - strand, within BWI76_RS09045at 1907.929 kb on + strand, within BWI76_RS09045at 1908.075 kb on - strand, within BWI76_RS09045at 1908.227 kb on + strand, within BWI76_RS09045at 1908.276 kb on - strandat 1908.424 kb on + strandat 1908.471 kb on - strandat 1908.550 kb on + strandat 1908.899 kb on + strand, within BWI76_RS09050at 1909.031 kb on + strand, within BWI76_RS09050

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Per-strain Table

Position Strand Gene LocusTag Fraction LB in EcoFAB_10mL
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1,905,721 + BWI76_RS09040 0.85 -0.4
1,905,940 - +0.3
1,905,943 + +1.7
1,905,951 - -0.2
1,906,042 + -0.4
1,906,276 - +0.5
1,906,302 + +1.5
1,906,397 + BWI76_RS09045 0.11 +2.5
1,906,699 + BWI76_RS09045 0.24 +1.0
1,906,737 + BWI76_RS09045 0.26 -0.1
1,906,794 - BWI76_RS09045 0.28 -1.8
1,907,086 - BWI76_RS09045 0.40 -0.4
1,907,574 + BWI76_RS09045 0.61 +0.2
1,907,857 - BWI76_RS09045 0.73 -0.3
1,907,929 + BWI76_RS09045 0.76 -0.6
1,908,075 - BWI76_RS09045 0.82 +2.4
1,908,227 + BWI76_RS09045 0.89 -1.3
1,908,276 - +0.8
1,908,424 + -0.7
1,908,471 - +0.0
1,908,550 + -0.7
1,908,899 + BWI76_RS09050 0.30 -0.2
1,909,031 + BWI76_RS09050 0.40 -0.6

Or see this region's nucleotide sequence